Analysis of interatomic Contacts of Structural Units in PDB entry:
2RJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RJF entry

There are 7 chains in PDB entry 2RJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 206PRO 520
B
 ARG 17ARG 19
B
 VAL 21ILE 26
C
 TRP 206PRO 520
D
 ARG 17ARG 19
D
 VAL 21ASN 25
E
 TRP 206PRO 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2RJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
207 216Right-handed alpha
Helix 2
2
A
221 225Right-handed 310
Helix 3
3
A
226 231Right-handed alpha
Helix 4
4
A
276 280Right-handed 310
Helix 5
5
A
294 300Right-handed alpha
Helix 6
6
A
315 324Right-handed alpha
Helix 7
7
A
329 333Right-handed 310
Helix 8
8
A
383 387Right-handed 310
Helix 9
9
A
401 407Right-handed alpha
Helix 10
10
A
418 422Right-handed 310
Helix 11
11
A
423 431Right-handed alpha
Helix 12
12
A
437 441Right-handed 310
Helix 13
13
A
487 491Right-handed 310
Helix 14
14
A
505 511Right-handed alpha
Helix 15
15
C
207 216Right-handed alpha
Helix 16
16
C
221 225Right-handed 310
Helix 17
17
C
226 231Right-handed alpha
Helix 18
18
C
276 280Right-handed 310
Helix 19
19
C
294 300Right-handed alpha
Helix 20
20
C
315 324Right-handed alpha
Helix 21
21
C
329 333Right-handed 310
Helix 22
22
C
383 387Right-handed 310
Helix 23
23
C
401 407Right-handed alpha
Helix 24
24
C
423 431Right-handed alpha
Helix 25
25
C
437 441Right-handed 310
Helix 26
26
C
487 491Right-handed 310
Helix 27
27
C
505 511Right-handed alpha
Helix 28
28
E
207 216Right-handed alpha
Helix 29
29
E
221 225Right-handed 310
Helix 30
30
E
226 231Right-handed alpha
Helix 31
31
E
276 280Right-handed 310
Helix 32
32
E
294 300Right-handed alpha
Helix 33
33
E
310 314Right-handed 310
Helix 34
34
E
315 324Right-handed alpha
Helix 35
35
E
329 333Right-handed 310
Helix 36
36
E
383 387Right-handed 310
Helix 37
37
E
401 406Right-handed alpha
Helix 38
38
E
418 422Right-handed 310
Helix 39
39
E
423 432Right-handed alpha
Helix 40
40
E
437 441Right-handed 310
Helix 41
41
E
487 491Right-handed 310
Helix 42
42
E
505 511Right-handed alpha
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There are 16 sheets in PDB entry 2RJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
251 264anti-parallel
Strand 4
A
243 248anti-parallel
Strand 5
A
290 291anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
251 264anti-parallel
Strand 4
A
303 304parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
358 371anti-parallel
Strand 4
A
350 355anti-parallel
Strand 5
A
397 398anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
358 371anti-parallel
Strand 4
A
410 411parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 495first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
466 474anti-parallel
Strand 4
A
454 458anti-parallel
Strand 5
A
501 502anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
D
21 23anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 284first strand
Strand 2
C
267 272anti-parallel
Strand 3
C
251 264anti-parallel
Strand 4
C
243 248anti-parallel
Strand 5
C
290 291anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 284first strand
Strand 2
C
267 272anti-parallel
Strand 3
C
251 264anti-parallel
Strand 4
C
303 304parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
388 390first strand
Strand 2
C
374 379anti-parallel
Strand 3
C
362 371anti-parallel
Strand 4
C
350 354anti-parallel
Strand 5
C
397 398anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
388 390first strand
Strand 2
C
374 379anti-parallel
Strand 3
C
362 371anti-parallel
Strand 4
C
410 411parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
492 495first strand
Strand 2
C
478 483anti-parallel
Strand 3
C
466 474anti-parallel
Strand 4
C
454 458anti-parallel
Strand 5
C
501 502anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
281 284first strand
Strand 2
E
267 272anti-parallel
Strand 3
E
251 264anti-parallel
Strand 4
E
243 248anti-parallel
Strand 5
E
290 291anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
281 284first strand
Strand 2
E
267 272anti-parallel
Strand 3
E
251 264anti-parallel
Strand 4
E
303 304parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
388 390first strand
Strand 2
E
374 379anti-parallel
Strand 3
E
362 371anti-parallel
Strand 4
E
350 354anti-parallel
Strand 5
E
397 398anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
388 390first strand
Strand 2
E
374 379anti-parallel
Strand 3
E
362 371anti-parallel
Strand 4
E
410 411parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
492 495first strand
Strand 2
E
478 483anti-parallel
Strand 3
E
466 474anti-parallel
Strand 4
E
454 458anti-parallel
Strand 5
E
501 502anti-parallel
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