Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2RPQ entry
There are 2 chains in PDB entry 2RPQ
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
MET 1 | GLY 93 |
B
|
GLY 965 | GLU 975 |
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There is 1
helix in PDB entry 2RPQ. Click on helix number for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 39 |
52 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 2RPQ.
There are 6
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 65 |
67 | first strand |
Strand 2 |
A
| 58 |
62 | anti-parallel |
Strand 3 |
A
| 81 |
88 | anti-parallel |
Strand 4 |
A
| 17 |
23 | parallel |
Strand 5 |
A
| 29 |
35 | anti-parallel |
|