Analysis of interatomic Contacts of Structural Units in PDB entry:
2RT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RT5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 2RT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 3496VAL 3664
B
TYR 2518LEU 2521
B
ASP 2523ASP 2523
B
GLU 2525GLU 2525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2RT5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3497 3502Right-handed alpha
Helix 2
2
A
3530 3538Right-handed alpha
Helix 3
3
A
3556 3568Right-handed alpha
Helix 4
4
A
3584 3599Right-handed alpha
Helix 5
5
A
3599 3607Right-handed alpha
Helix 6
6
A
3632 3643Right-handed alpha
Helix 7
7
A
3643 3651Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2RT5.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3547 3548first strand
Strand 2
A
3507 3515parallel
Strand 3
A
3518 3529anti-parallel
Strand 4
A
3573 3580anti-parallel
Strand 5
A
3657 3663anti-parallel
Strand 6
A
3624 3629anti-parallel
Strand 7
A
3610 3614anti-parallel
Strand 8
A
3551 3552anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il