Analysis of interatomic Contacts of Structural Units in PDB entry:
2TRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2TRC entry

There are 3 chains in PDB entry 2TRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ASN 340
G
 MET 501LYS 568
P
 GLU 14ARG 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2TRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
7 23Right-handed alpha
Helix 2
2
B
30 33Right-handed alpha
Helix 3
3
B
308 311Right-handed 310
Helix 4
4
G
511 526Right-handed alpha
Helix 5
5
G
533 550Right-handed alpha
Helix 6
6
G
552 555Right-handed alpha
Helix 7
7
P
21 36Right-handed alpha
Helix 8
8
P
62 64Right-handed 310
Helix 9
9
P
74 82Right-handed alpha
Helix 10
10
P
87 103Right-handed alpha
Helix 11
11
P
120 129Right-handed alpha
Helix 12
12
P
148 159Right-handed alpha
Helix 13
13
P
172 175Right-handed alpha
Helix 14
14
P
183 185Right-handed 310
Helix 15
15
P
204 207Right-handed 310
Helix 16
16
P
214 224Right-handed alpha
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There are 8 sheets in PDB entry 2TRC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
100 105anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
166 170anti-parallel
Strand 3
B
156 161anti-parallel
Strand 4
B
146 151anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
217 223anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
303 308anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 320first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
336 340anti-parallel
Strand 4
B
46 51anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
114 116first strand
Strand 2
P
166 171parallel
Strand 3
P
135 141parallel
Strand 4
P
188 193anti-parallel
Strand 5
P
196 201anti-parallel
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