Analysis of interatomic Contacts of Structural Units in PDB entry:
2UZX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UZX entry

There are 4 chains in PDB entry 2UZX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 34	LYS 320
B	GLN 42	VAL 658
C	ALA 34	LYS 320
D	GLN 42	VAL 658

There are 36 helices in PDB entry 2UZX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	48	Right-handed alpha
Helix 2	2	A	50	61	Right-handed alpha
Helix 3	3	A	71	77	Right-handed alpha
Helix 4	4	A	93	97	Right-handed 310
Helix 5	5	A	113	117	Right-handed 310
Helix 6	6	A	134	139	Right-handed 310
Helix 7	7	A	157	163	Right-handed 310
Helix 8	8	A	179	184	Right-handed 310
Helix 9	9	A	201	205	Right-handed 310
Helix 10	10	A	223	229	Right-handed 310
Helix 11	11	B	230	232	Right-handed 310
Helix 12	12	B	238	242	Right-handed 310
Helix 13	13	B	326	334	Right-handed alpha
Helix 14	14	B	367	375	Right-handed alpha
Helix 15	15	B	386	391	Right-handed alpha
Helix 16	16	B	525	532	Right-handed alpha
Helix 17	17	B	533	536	Right-handed 310
Helix 18	18	B	614	617	Right-handed 310
Helix 19	19	C	44	48	Right-handed alpha
Helix 20	20	C	50	61	Right-handed alpha
Helix 21	21	C	71	77	Right-handed alpha
Helix 22	22	C	93	97	Right-handed 310
Helix 23	23	C	113	117	Right-handed 310
Helix 24	24	C	134	139	Right-handed 310
Helix 25	25	C	157	163	Right-handed 310
Helix 26	26	C	179	184	Right-handed 310
Helix 27	27	C	201	205	Right-handed 310
Helix 28	28	C	223	229	Right-handed 310
Helix 29	29	D	230	232	Right-handed 310
Helix 30	30	D	238	242	Right-handed 310
Helix 31	31	D	326	334	Right-handed alpha
Helix 32	32	D	367	375	Right-handed alpha
Helix 33	33	D	386	391	Right-handed alpha
Helix 34	34	D	525	532	Right-handed alpha
Helix 35	35	D	533	536	Right-handed 310
Helix 36	36	D	614	617	Right-handed 310

There are 33 sheets in PDB entry 2UZX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, CA, CB, CC, CD, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, DL,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	69	70	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	102	104	parallel
Strand 3	A	124	126	parallel
Strand 4	A	146	148	parallel
Strand 5	A	168	170	parallel
Strand 6	A	190	192	parallel
Strand 7	A	212	214	parallel
Strand 8	A	234	236	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	307	320	parallel
Strand 3	A	293	304	anti-parallel
Strand 4	A	271	272	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	282	284	anti-parallel
Strand 3	A	277	279	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	501	506	anti-parallel
Strand 4	B	490	493	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	80	84	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	129	133	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	157	158	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	192	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	192	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	226	227	anti-parallel

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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	255	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	292	300	anti-parallel
Strand 5	B	418	420	parallel
Strand 6	B	383	384	anti-parallel

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There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	255	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	292	300	anti-parallel
Strand 5	B	424	427	parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	323	first strand
Strand 2	B	341	349	anti-parallel
Strand 3	B	356	366	anti-parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	447	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	462	466	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	540	first strand
Strand 2	B	545	547	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	569	first strand
Strand 2	B	580	586	anti-parallel
Strand 3	B	621	625	anti-parallel
Strand 4	B	611	612	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	595	597	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	609	first strand
Strand 2	B	602	605	anti-parallel
Strand 3	B	637	641	anti-parallel
Strand 4	B	646	650	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	69	70	anti-parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	102	104	parallel
Strand 3	C	124	126	parallel
Strand 4	C	146	148	parallel
Strand 5	C	168	170	parallel
Strand 6	C	190	192	parallel
Strand 7	C	212	214	parallel
Strand 8	C	234	236	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	307	320	parallel
Strand 3	C	293	304	anti-parallel
Strand 4	C	271	272	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	C	282	284	anti-parallel
Strand 3	C	277	279	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	509	514	anti-parallel
Strand 3	D	501	506	anti-parallel
Strand 4	D	490	493	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	58	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	80	84	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	129	133	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	157	158	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	189	first strand
Strand 2	D	192	199	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	234	235	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	189	first strand
Strand 2	D	192	199	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	226	227	anti-parallel

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There are 11 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	255	first strand
Strand 2	D	258	265	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	292	300	anti-parallel
Strand 5	D	312	314	anti-parallel
Strand 6	D	292	300	anti-parallel
Strand 7	D	383	384	first strand
Strand 8	D	418	420	anti-parallel
Strand 9	D	292	300	parallel
Strand 10	D	424	427	parallel
Strand 11	D	292	300	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	323	first strand
Strand 2	D	341	349	anti-parallel
Strand 3	D	356	366	anti-parallel

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There are 3 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	447	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	462	466	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	540	first strand
Strand 2	D	545	547	anti-parallel

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There are 4 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	569	first strand
Strand 2	D	580	586	anti-parallel
Strand 3	D	621	625	anti-parallel
Strand 4	D	611	612	anti-parallel

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There are 2 strands in DK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	592	first strand
Strand 2	D	595	597	anti-parallel

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There are 4 strands in DL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	608	609	first strand
Strand 2	D	602	605	anti-parallel
Strand 3	D	637	641	anti-parallel
Strand 4	D	646	650	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UZX

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UZX