Analysis of interatomic Contacts of Structural Units in PDB entry:
2V4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V4L entry

There is 1 chain in PDB entry 2V4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 144GLY 1093
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 2V4L. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
146 159Right-handed alpha
Helix 2
2
A
171 191Right-handed alpha
Helix 3
3
A
192 199Right-handed alpha
Helix 4
4
A
208 213Right-handed alpha
Helix 5
5
A
240 246Right-handed alpha
Helix 6
6
A
248 253Right-handed alpha
Helix 7
7
A
286 289Right-handed 310
Helix 8
8
A
290 299Right-handed alpha
Helix 9
9
A
312 317Right-handed 310
Helix 10
10
A
421 423Right-handed 310
Helix 11
11
A
498 503Right-handed 310
Helix 12
12
A
549 561Right-handed alpha
Helix 13
13
A
568 578Right-handed alpha
Helix 14
14
A
578 584Right-handed alpha
Helix 15
15
A
585 587Right-handed 310
Helix 16
16
A
588 594Right-handed alpha
Helix 17
17
A
600 612Right-handed alpha
Helix 18
18
A
614 620Right-handed alpha
Helix 19
19
A
623 631Right-handed alpha
Helix 20
20
A
637 649Right-handed alpha
Helix 21
21
A
652 667Right-handed alpha
Helix 22
22
A
668 670Right-handed 310
Helix 23
23
A
675 688Right-handed alpha
Helix 24
24
A
688 704Right-handed alpha
Helix 25
25
A
709 722Right-handed alpha
Helix 26
26
A
725 753Right-handed alpha
Helix 27
27
A
760 776Right-handed alpha
Helix 28
28
A
798 801Right-handed 310
Helix 29
29
A
837 857Right-handed alpha
Helix 30
30
A
888 894Right-handed alpha
Helix 31
31
A
905 915Right-handed alpha
Helix 32
32
A
917 942Right-handed alpha
Helix 33
33
A
948 950Right-handed 310
Helix 34
34
A
988 995Right-handed alpha
Helix 35
35
A
1003 1022Right-handed alpha
Helix 36
36
A
1023 1039Right-handed alpha
Helix 37
37
A
1045 1055Right-handed alpha
Helix 38
38
A
1060 1079Right-handed alpha
Helix 39
39
A
1080 1090Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2V4L. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
229 235first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
303 308parallel
Strand 4
A
271 274anti-parallel
Strand 5
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
407 419first strand
Strand 2
A
360 369anti-parallel
Strand 3
A
515 520anti-parallel
Strand 4
A
478 483anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
392 398first strand
Strand 2
A
382 389anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
460 467anti-parallel
Strand 5
A
485 486anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
802 803anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
828 834anti-parallel
Strand 5
A
876 880anti-parallel
Strand 6
A
869 873anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il