Analysis of interatomic Contacts of Structural Units in PDB entry:
2V53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V53 entry

There are 22 chains in PDB entry 2V53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ILE 286
B
 GLY 1PRO 2
B
 GLY 4PRO 5
B
 GLY 7PRO 8
B
 GLY 10GLN 17
B
 GLY 19PHE 23
B
 GLY 25PRO 29
B
 GLY 31ALA 32
C
 GLY 1PRO 2
C
 GLY 4PRO 5
C
 GLY 7PRO 8
C
 GLY 10GLN 17
C
 GLY 19PHE 23
C
 GLY 25PRO 29
C
 GLY 31ALA 32
D
 GLY 1PRO 2
D
 GLY 4PRO 5
D
 GLY 7PRO 8
D
 GLY 10GLN 17
D
 GLY 19PHE 23
D
 GLY 25PRO 29
D
 GLY 31ALA 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2V53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
A
104 114Right-handed alpha
Helix 3
3
A
139 145Right-handed alpha
Helix 4
4
A
146 163Right-handed alpha
Helix 5
5
A
172 184Right-handed alpha
Helix 6
6
A
210 222Right-handed alpha
Helix 7
7
A
231 240Right-handed alpha
Helix 8
8
A
242 246Right-handed 310
Helix 9
9
A
247 255Right-handed alpha
Helix 10
10
A
266 273Right-handed alpha
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There are 3 sheets in PDB entry 2V53. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
74 78anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
128 129anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
264 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il