Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5L entry

There are 2 chains in PDB entry 2V5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 250
B
 SER 302GLN 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2V5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
47 55Right-handed alpha
Helix 3
3
A
79 87Right-handed alpha
Helix 4
4
A
95 102Right-handed alpha
Helix 5
5
A
105 119Right-handed alpha
Helix 6
6
A
130 136Right-handed alpha
Helix 7
7
A
138 152Right-handed alpha
Helix 8
8
A
155 160Right-handed 310
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
179 199Right-handed alpha
Helix 11
11
A
199 206Right-handed alpha
Helix 12
12
A
218 224Right-handed alpha
Helix 13
13
A
234 239Right-handed 310
Helix 14
14
A
240 249Right-handed alpha
Helix 15
15
B
317 330Right-handed alpha
Helix 16
16
B
347 355Right-handed alpha
Helix 17
17
B
379 386Right-handed alpha
Helix 18
18
B
395 402Right-handed alpha
Helix 19
19
B
405 419Right-handed alpha
Helix 20
20
B
430 436Right-handed alpha
Helix 21
21
B
438 453Right-handed alpha
Helix 22
22
B
456 460Right-handed 310
Helix 23
23
B
468 472Right-handed 310
Helix 24
24
B
479 498Right-handed alpha
Helix 25
25
B
499 506Right-handed alpha
Helix 26
26
B
518 525Right-handed alpha
Helix 27
27
B
534 539Right-handed 310
Helix 28
28
B
540 548Right-handed alpha
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There are 3 sheets in PDB entry 2V5L. Click on sheet of interest to get list of strands forming it: AA, BA, BB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
38 42parallel
Strand 3
A
60 64parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
162 166parallel
Strand 7
A
207 210parallel
Strand 8
A
230 233parallel
Strand 9
A
7 11parallel
Strand 10
A
7 11first strand
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 364first strand
Strand 2
B
338 343parallel
Strand 3
B
307 311parallel
Strand 4
B
530 533parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 393first strand
Strand 2
B
422 427parallel
Strand 3
B
462 466parallel
Strand 4
B
507 510parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il