Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9R entry

There is 1 chain in PDB entry 2V9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 64GLU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2V9R. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
231 235Right-handed 310
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There are 8 sheets in PDB entry 2V9R. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 72first strand
Strand 2
A
90 94anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 79first strand
Strand 2
A
161 165parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
98 103anti-parallel
Strand 5
A
106 107anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 79first strand
Strand 2
A
161 165parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
154 157anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 87first strand
Strand 2
A
127 129anti-parallel
Strand 3
A
119 121anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 168first strand
Strand 2
A
196 197anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
179 182first strand
Strand 2
A
254 259parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
209 211anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
179 182first strand
Strand 2
A
254 259parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
247 250anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 190first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
218 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il