Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9T entry

There are 2 chains in PDB entry 2V9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60ALA 166
B
 GLY 269CYS 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2V9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
435 437Right-handed 310
Helix 2
2
B
438 448Right-handed alpha
Helix 3
3
B
460 464Right-handed 310
Helix 4
4
B
468 471Right-handed 310
Helix 5
5
B
472 476Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 2V9T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
90 94anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
161 165parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
98 103anti-parallel
Strand 5
A
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
161 165parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
154 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
127 129anti-parallel
Strand 3
A
119 121anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 280first strand
Strand 2
B
283 285anti-parallel
Strand 3
B
304 306parallel
Strand 4
B
328 330parallel
Strand 5
B
352 354parallel
Strand 6
B
376 378parallel
Strand 7
B
400 402parallel
Strand 8
B
424 426parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
338 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 433first strand
Strand 2
B
457 459parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il