Analysis of interatomic Contacts of Structural Units in PDB entry:
2VAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VAP entry

There is 1 chain in PDB entry 2VAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2VAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
46 60Right-handed alpha
Helix 3
3
A
72 78Right-handed alpha
Helix 4
4
A
100 111Right-handed alpha
Helix 5
5
A
111 120Right-handed alpha
Helix 6
6
A
134 150Right-handed alpha
Helix 7
7
A
162 165Right-handed 310
Helix 8
8
A
166 182Right-handed alpha
Helix 9
9
A
194 199Right-handed alpha
Helix 10
10
A
203 228Right-handed alpha
Helix 11
11
A
235 244Right-handed alpha
Helix 12
12
A
260 271Right-handed alpha
Helix 13
13
A
278 282Right-handed 310
Helix 14
14
A
296 311Right-handed alpha
Helix 15
15
A
340 342Right-handed 310
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There are 2 sheets in PDB entry 2VAP. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
64 70parallel
Strand 3
A
40 45parallel
Strand 4
A
124 130parallel
Strand 5
A
153 160parallel
Strand 6
A
186 191parallel
Strand 7
A
247 256parallel
Strand 8
A
331 338anti-parallel
Strand 9
A
284 291anti-parallel
Strand 10
A
316 323parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
350 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il