Analysis of interatomic Contacts of Structural Units in PDB entry:
2VF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VF7 entry

There are 3 chains in PDB entry 2VF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 11ARG 842
B
PRO 8ARG 842
C
PHE 10ARG 842
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are125 helices in PDB entry 2VF7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
48 54Right-handed alpha
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
76 81Right-handed alpha
Helix 4
AA4
A
109 114Right-handed alpha
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
138 143Right-handed 310
Helix 7
AA7
A
164 169Right-handed alpha
Helix 8
AA8
A
186 200Right-handed alpha
Helix 9
AA9
A
207 211Right-handed 310
Helix 10
AB1
A
212 222Right-handed alpha
Helix 11
AB2
A
235 246Right-handed alpha
Helix 12
AB3
A
257 269Right-handed alpha
Helix 13
AB4
A
271 279Right-handed alpha
Helix 14
AB5
A
280 282Right-handed 310
Helix 15
AB6
A
308 315Right-handed alpha
Helix 16
AB7
A
316 329Right-handed alpha
Helix 17
AB8
A
344 366Right-handed alpha
Helix 18
AB9
A
376 380Right-handed 310
Helix 19
AC1
A
381 394Right-handed alpha
Helix 20
AC2
A
413 415Right-handed 310
Helix 21
AC3
A
416 429Right-handed alpha
Helix 22
AC4
A
440 445Right-handed alpha
Helix 23
AC5
A
457 461Right-handed 310
Helix 24
AC6
A
469 476Right-handed 310
Helix 25
AC7
A
479 487Right-handed alpha
Helix 26
AC8
A
535 540Right-handed alpha
Helix 27
AC9
A
544 552Right-handed alpha
Helix 28
AD1
A
580 583Right-handed 310
Helix 29
AD2
A
601 606Right-handed alpha
Helix 30
AD3
A
608 618Right-handed alpha
Helix 31
AD4
A
619 625Right-handed alpha
Helix 32
AD5
A
628 633Right-handed 310
Helix 33
AD6
A
675 679Right-handed 310
Helix 34
AD7
A
685 691Right-handed alpha
Helix 35
AD8
A
693 701Right-handed alpha
Helix 36
AD9
A
704 717Right-handed alpha
Helix 37
AE1
A
727 731Right-handed 310
Helix 38
AE2
A
732 744Right-handed alpha
Helix 39
AE3
A
765 782Right-handed alpha
Helix 40
AE4
A
792 797Right-handed alpha
Helix 41
AE5
A
809 813Right-handed 310
Helix 42
AE6
A
821 826Right-handed alpha
Helix 43
AE7
A
833 841Right-handed alpha
Helix 44
AE8
B
48 54Right-handed alpha
Helix 45
AE9
B
56 70Right-handed alpha
Helix 46
AF1
B
109 114Right-handed alpha
Helix 47
AF2
B
115 127Right-handed alpha
Helix 48
AF3
B
138 143Right-handed 310
Helix 49
AF4
B
164 169Right-handed alpha
Helix 50
AF5
B
187 201Right-handed alpha
Helix 51
AF6
B
207 211Right-handed 310
Helix 52
AF7
B
212 222Right-handed alpha
Helix 53
AF8
B
235 245Right-handed alpha
Helix 54
AF9
B
257 269Right-handed alpha
Helix 55
AG1
B
271 280Right-handed alpha
Helix 56
AG2
B
296 301Right-handed alpha
Helix 57
AG3
B
308 313Right-handed alpha
Helix 58
AG4
B
316 330Right-handed alpha
Helix 59
AG5
B
335 342Right-handed alpha
Helix 60
AG6
B
342 366Right-handed alpha
Helix 61
AG7
B
376 380Right-handed 310
Helix 62
AG8
B
381 394Right-handed alpha
Helix 63
AG9
B
416 429Right-handed alpha
Helix 64
AH1
B
440 447Right-handed alpha
Helix 65
AH2
B
457 461Right-handed 310
Helix 66
AH3
B
469 475Right-handed 310
Helix 67
AH4
B
479 487Right-handed alpha
Helix 68
AH5
B
535 541Right-handed alpha
Helix 69
AH6
B
542 552Right-handed alpha
Helix 70
AH7
B
579 583Right-handed 310
Helix 71
AH8
B
601 607Right-handed alpha
Helix 72
AH9
B
608 616Right-handed alpha
Helix 73
AI1
B
620 625Right-handed alpha
Helix 74
AI2
B
675 679Right-handed 310
Helix 75
AI3
B
685 691Right-handed alpha
Helix 76
AI4
B
693 701Right-handed alpha
Helix 77
AI5
B
704 718Right-handed alpha
Helix 78
AI6
B
727 731Right-handed 310
Helix 79
AI7
B
733 748Right-handed alpha
Helix 80
AI8
B
765 782Right-handed alpha
Helix 81
AI9
B
792 797Right-handed alpha
Helix 82
AJ1
B
809 813Right-handed 310
Helix 83
AJ2
B
821 827Right-handed alpha
Helix 84
AJ3
B
833 841Right-handed alpha
Helix 85
AJ4
C
48 54Right-handed alpha
Helix 86
AJ5
C
56 70Right-handed alpha
Helix 87
AJ6
C
72 81Right-handed 310
Helix 88
AJ7
C
109 114Right-handed alpha
Helix 89
AJ8
C
115 127Right-handed alpha
Helix 90
AJ9
C
164 169Right-handed alpha
Helix 91
AK1
C
187 200Right-handed alpha
Helix 92
AK2
C
207 211Right-handed 310
Helix 93
AK3
C
212 222Right-handed alpha
Helix 94
AK4
C
235 245Right-handed alpha
Helix 95
AK5
C
257 269Right-handed alpha
Helix 96
AK6
C
273 280Right-handed alpha
Helix 97
AK7
C
296 301Right-handed alpha
Helix 98
AK8
C
308 314Right-handed alpha
Helix 99
AK9
C
316 329Right-handed alpha
Helix 100
AL1
C
342 366Right-handed alpha
Helix 101
AL2
C
376 380Right-handed 310
Helix 102
AL3
C
381 394Right-handed alpha
Helix 103
AL4
C
413 415Right-handed 310
Helix 104
AL5
C
416 429Right-handed alpha
Helix 105
AL6
C
440 445Right-handed alpha
Helix 106
AL7
C
457 461Right-handed 310
Helix 107
AL8
C
469 476Right-handed 310
Helix 108
AL9
C
479 487Right-handed alpha
Helix 109
AM1
C
535 541Right-handed alpha
Helix 110
AM2
C
542 552Right-handed alpha
Helix 111
AM3
C
601 606Right-handed alpha
Helix 112
AM4
C
607 618Right-handed alpha
Helix 113
AM5
C
619 625Right-handed alpha
Helix 114
AM6
C
628 633Right-handed 310
Helix 115
AM7
C
673 678Right-handed alpha
Helix 116
AM8
C
686 691Right-handed alpha
Helix 117
AM9
C
693 701Right-handed alpha
Helix 118
AN1
C
704 717Right-handed alpha
Helix 119
AN2
C
727 731Right-handed 310
Helix 120
AN3
C
732 743Right-handed alpha
Helix 121
AN4
C
747 751Right-handed 310
Helix 122
AN5
C
765 782Right-handed alpha
Helix 123
AN6
C
792 797Right-handed alpha
Helix 124
AN7
C
821 826Right-handed alpha
Helix 125
AN8
C
833 842Right-handed alpha
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There are 22 sheets in PDB entry 2VF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 34first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
87 89anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 96first strand
Strand 2
A
402 406parallel
Strand 3
A
433 437parallel
Strand 4
A
38 42parallel
Strand 5
A
449 453parallel
Strand 6
A
464 468anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 162first strand
Strand 2
A
283 286anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 230first strand
Strand 2
A
251 254anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
513 521first strand
Strand 2
A
502 510anti-parallel
Strand 3
A
575 578anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
585 589first strand
Strand 2
A
753 758parallel
Strand 3
A
785 789parallel
Strand 4
A
525 529parallel
Strand 5
A
801 805parallel
Strand 6
A
816 820anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
649 652first strand
Strand 2
A
660 663anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 34first strand
Strand 2
B
15 21anti-parallel
Strand 3
B
87 89anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
94 96first strand
Strand 2
B
402 406parallel
Strand 3
B
433 437parallel
Strand 4
B
38 43parallel
Strand 5
B
449 453parallel
Strand 6
B
464 468anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 162first strand
Strand 2
B
283 286anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 230first strand
Strand 2
B
251 254anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
513 522first strand
Strand 2
B
501 510anti-parallel
Strand 3
B
573 576anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
585 589first strand
Strand 2
B
753 758parallel
Strand 3
B
785 789parallel
Strand 4
B
525 530parallel
Strand 5
B
801 805parallel
Strand 6
B
816 820anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
649 651first strand
Strand 2
B
661 663anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 34first strand
Strand 2
C
15 21anti-parallel
Strand 3
C
87 89anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
94 96first strand
Strand 2
C
402 406parallel
Strand 3
C
433 437parallel
Strand 4
C
38 42parallel
Strand 5
C
449 453parallel
Strand 6
C
464 468anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
159 162first strand
Strand 2
C
283 286anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
227 230first strand
Strand 2
C
251 254anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
513 522first strand
Strand 2
C
501 510anti-parallel
Strand 3
C
575 578anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
585 589first strand
Strand 2
C
753 758parallel
Strand 3
C
785 789parallel
Strand 4
C
525 529parallel
Strand 5
C
801 805parallel
Strand 6
C
816 820anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
649 651first strand
Strand 2
C
661 663anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
680 681first strand
Strand 2
C
684 685anti-parallel
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