Analysis of interatomic Contacts of Structural Units in PDB entry:
2VF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VF8 entry

There are 2 chains in PDB entry 2VF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 10ARG 842
B
PRO 8ARG 842
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 2VF8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
48 54Right-handed alpha
Helix 2
2
A
56 70Right-handed alpha
Helix 3
3
A
109 114Right-handed alpha
Helix 4
4
A
115 127Right-handed alpha
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
A
164 169Right-handed alpha
Helix 7
7
A
176 179Right-handed 310
Helix 8
8
A
187 200Right-handed alpha
Helix 9
9
A
208 211Right-handed 310
Helix 10
10
A
215 222Right-handed alpha
Helix 11
11
A
235 245Right-handed alpha
Helix 12
12
A
257 269Right-handed alpha
Helix 13
13
A
271 280Right-handed alpha
Helix 14
14
A
296 301Right-handed alpha
Helix 15
15
A
308 314Right-handed alpha
Helix 16
16
A
316 329Right-handed alpha
Helix 17
17
A
335 339Right-handed 310
Helix 18
18
A
342 366Right-handed alpha
Helix 19
19
A
377 380Right-handed 310
Helix 20
20
A
381 397Right-handed alpha
Helix 21
21
A
416 429Right-handed alpha
Helix 22
22
A
440 447Right-handed alpha
Helix 23
23
A
457 461Right-handed 310
Helix 24
24
A
469 476Right-handed 310
Helix 25
25
A
479 487Right-handed alpha
Helix 26
26
A
535 541Right-handed alpha
Helix 27
27
A
542 552Right-handed alpha
Helix 28
28
A
579 583Right-handed 310
Helix 29
29
A
601 607Right-handed alpha
Helix 30
30
A
607 618Right-handed alpha
Helix 31
31
A
619 625Right-handed alpha
Helix 32
32
A
685 691Right-handed alpha
Helix 33
33
A
693 701Right-handed alpha
Helix 34
34
A
704 716Right-handed alpha
Helix 35
35
A
733 748Right-handed alpha
Helix 36
36
A
765 782Right-handed alpha
Helix 37
37
A
792 798Right-handed alpha
Helix 38
38
A
809 813Right-handed 310
Helix 39
39
A
821 826Right-handed alpha
Helix 40
40
A
833 840Right-handed alpha
Helix 41
41
B
48 54Right-handed alpha
Helix 42
42
B
56 70Right-handed alpha
Helix 43
43
B
72 77Right-handed alpha
Helix 44
44
B
109 114Right-handed alpha
Helix 45
45
B
115 127Right-handed alpha
Helix 46
46
B
138 142Right-handed 310
Helix 47
47
B
164 169Right-handed alpha
Helix 48
48
B
186 200Right-handed alpha
Helix 49
49
B
207 211Right-handed 310
Helix 50
50
B
212 222Right-handed alpha
Helix 51
51
B
235 245Right-handed alpha
Helix 52
52
B
257 269Right-handed alpha
Helix 53
53
B
271 280Right-handed alpha
Helix 54
54
B
296 302Right-handed alpha
Helix 55
55
B
308 315Right-handed alpha
Helix 56
56
B
316 329Right-handed alpha
Helix 57
57
B
335 340Right-handed alpha
Helix 58
58
B
342 366Right-handed alpha
Helix 59
59
B
377 380Right-handed 310
Helix 60
60
B
381 396Right-handed alpha
Helix 61
61
B
413 415Right-handed 310
Helix 62
62
B
416 429Right-handed alpha
Helix 63
63
B
440 445Right-handed alpha
Helix 64
64
B
457 460Right-handed 310
Helix 65
65
B
469 476Right-handed 310
Helix 66
66
B
479 487Right-handed alpha
Helix 67
67
B
535 541Right-handed alpha
Helix 68
68
B
542 550Right-handed alpha
Helix 69
69
B
580 583Right-handed 310
Helix 70
70
B
601 607Right-handed alpha
Helix 71
71
B
608 617Right-handed alpha
Helix 72
72
B
619 625Right-handed alpha
Helix 73
73
B
673 678Right-handed alpha
Helix 74
74
B
685 691Right-handed alpha
Helix 75
75
B
693 701Right-handed alpha
Helix 76
76
B
704 717Right-handed alpha
Helix 77
77
B
727 731Right-handed 310
Helix 78
78
B
735 746Right-handed alpha
Helix 79
79
B
765 781Right-handed alpha
Helix 80
80
B
792 799Right-handed alpha
Helix 81
81
B
809 813Right-handed 310
Helix 82
82
B
821 826Right-handed alpha
Helix 83
83
B
833 842Right-handed alpha
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There are 14 sheets in PDB entry 2VF8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 34first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
85 89anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 96first strand
Strand 2
A
402 406parallel
Strand 3
A
433 437parallel
Strand 4
A
38 43parallel
Strand 5
A
449 453parallel
Strand 6
A
464 468anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 162first strand
Strand 2
A
283 286anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 230first strand
Strand 2
A
251 254anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
502 510first strand
Strand 2
A
513 521anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
786 789first strand
Strand 2
A
525 530parallel
Strand 3
A
801 805parallel
Strand 4
A
816 820anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
585 588first strand
Strand 2
A
753 756parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 34first strand
Strand 2
B
15 21anti-parallel
Strand 3
B
85 89anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
94 96first strand
Strand 2
B
402 406parallel
Strand 3
B
433 437parallel
Strand 4
B
38 42parallel
Strand 5
B
449 453parallel
Strand 6
B
464 468anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 162first strand
Strand 2
B
283 286anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 230first strand
Strand 2
B
251 254anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
513 521first strand
Strand 2
B
502 510anti-parallel
Strand 3
B
575 578anti-parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
586 589first strand
Strand 2
B
754 757parallel
Strand 3
B
785 789parallel
Strand 4
B
525 530parallel
Strand 5
B
801 805parallel
Strand 6
B
818 820anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
649 651first strand
Strand 2
B
661 663anti-parallel
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