Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGE entry

There is 1 chain in PDB entry 2VGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 616PRO 823
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2VGE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
626 638Right-handed alpha
Helix 2
2
A
639 650Right-handed alpha
Helix 3
3
A
662 670Right-handed alpha
Helix 4
4
A
672 682Right-handed alpha
Helix 5
5
A
695 703Right-handed alpha
Helix 6
6
A
705 714Right-handed alpha
Helix 7
7
A
730 734Right-handed 310
Helix 8
8
A
740 755Right-handed alpha
Helix 9
9
A
758 760Right-handed 310
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There is 1 sheet ( AA) in PDB entry 2VGE.

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
806 811first strand
Strand 2
A
798 803anti-parallel
Strand 3
A
784 789anti-parallel
Strand 4
A
762 765anti-parallel
Strand 5
A
815 816anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il