Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGL entry

There are 4 chains in PDB entry 2VGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9ARG 608
B
 SER 4VAL 582
M
 MET 1CYS 435
S
 MET 1GLU 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 2VGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
25 46Right-handed alpha
Helix 3
3
A
51 69Right-handed alpha
Helix 4
4
A
75 82Right-handed alpha
Helix 5
5
A
83 85Right-handed 310
Helix 6
6
A
87 101Right-handed alpha
Helix 7
7
A
105 122Right-handed alpha
Helix 8
8
A
124 139Right-handed alpha
Helix 9
9
A
140 148Right-handed alpha
Helix 10
10
A
149 157Right-handed alpha
Helix 11
11
A
161 179Right-handed alpha
Helix 12
12
A
180 183Right-handed 310
Helix 13
13
A
188 196Right-handed alpha
Helix 14
14
A
200 218Right-handed alpha
Helix 15
15
A
218 223Right-handed alpha
Helix 16
16
A
224 239Right-handed alpha
Helix 17
17
A
254 265Right-handed alpha
Helix 18
18
A
266 268Right-handed 310
Helix 19
19
A
273 293Right-handed alpha
Helix 20
20
A
299 321Right-handed alpha
Helix 21
21
A
323 338Right-handed alpha
Helix 22
22
A
342 357Right-handed alpha
Helix 23
23
A
362 368Right-handed alpha
Helix 24
24
A
369 378Right-handed alpha
Helix 25
25
A
382 397Right-handed alpha
Helix 26
26
A
398 416Right-handed alpha
Helix 27
27
A
417 436Right-handed alpha
Helix 28
28
A
439 454Right-handed alpha
Helix 29
29
A
455 457Right-handed 310
Helix 30
30
A
459 470Right-handed alpha
Helix 31
31
A
471 473Right-handed 310
Helix 32
32
A
475 488Right-handed alpha
Helix 33
33
A
493 508Right-handed alpha
Helix 34
34
A
508 513Right-handed alpha
Helix 35
35
A
518 531Right-handed alpha
Helix 36
36
A
534 552Right-handed alpha
Helix 37
37
A
555 564Right-handed alpha
Helix 38
38
A
565 570Right-handed alpha
Helix 39
39
A
573 589Right-handed alpha
Helix 40
40
B
13 22Right-handed alpha
Helix 41
41
B
26 43Right-handed alpha
Helix 42
42
B
47 49Right-handed 310
Helix 43
43
B
50 57Right-handed alpha
Helix 44
44
B
62 80Right-handed alpha
Helix 45
45
B
80 86Right-handed alpha
Helix 46
46
B
87 92Right-handed alpha
Helix 47
47
B
93 95Right-handed 310
Helix 48
48
B
99 112Right-handed alpha
Helix 49
49
B
115 117Right-handed 310
Helix 50
50
B
118 130Right-handed alpha
Helix 51
51
B
134 151Right-handed alpha
Helix 52
52
B
155 168Right-handed alpha
Helix 53
53
B
173 178Right-handed alpha
Helix 54
54
B
179 188Right-handed alpha
Helix 55
55
B
199 214Right-handed alpha
Helix 56
56
B
215 228Right-handed alpha
Helix 57
57
B
233 245Right-handed alpha
Helix 58
58
B
253 266Right-handed alpha
Helix 59
59
B
276 284Right-handed alpha
Helix 60
60
B
284 292Right-handed alpha
Helix 61
61
B
295 313Right-handed alpha
Helix 62
62
B
331 345Right-handed alpha
Helix 63
63
B
350 362Right-handed alpha
Helix 64
64
B
366 382Right-handed alpha
Helix 65
65
B
384 401Right-handed alpha
Helix 66
66
B
403 421Right-handed alpha
Helix 67
67
B
428 435Right-handed alpha
Helix 68
68
B
441 454Right-handed alpha
Helix 69
69
B
461 470Right-handed alpha
Helix 70
70
B
477 493Right-handed alpha
Helix 71
71
B
499 512Right-handed alpha
Helix 72
72
B
516 528Right-handed alpha
Helix 73
73
B
535 542Right-handed alpha
Helix 74
74
B
556 565Right-handed alpha
Helix 75
75
B
570 575Right-handed alpha
Helix 76
76
B
577 581Right-handed 310
Helix 77
77
M
25 36Right-handed alpha
Helix 78
78
M
74 94Right-handed alpha
Helix 79
79
M
97 104Right-handed alpha
Helix 80
80
M
104 115Right-handed alpha
Helix 81
81
M
125 130Right-handed alpha
Helix 82
82
M
131 133Right-handed 310
Helix 83
83
M
415 418Right-handed 310
Helix 84
84
S
24 41Right-handed alpha
Helix 85
85
S
76 95Right-handed alpha
Helix 86
86
S
99 106Right-handed alpha
Helix 87
87
S
106 117Right-handed alpha
Helix 88
88
S
127 141Right-handed alpha
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There are 8 sheets in PDB entry 2VGL. Click on sheet of interest to get list of strands forming it: AA, MA, MB, MC, MD, ME, SA, SB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
252 253anti-parallel
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There are 5 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
14 19first strand
Strand 2
M
4 8anti-parallel
Strand 3
M
63 69anti-parallel
Strand 4
M
53 60anti-parallel
Strand 5
M
47 50anti-parallel
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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
116 117first strand
Strand 2
M
120 121anti-parallel
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There are 9 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
245 248first strand
Strand 2
M
270 279anti-parallel
Strand 3
M
191 205anti-parallel
Strand 4
M
172 185anti-parallel
Strand 5
M
419 433parallel
Strand 6
M
386 392anti-parallel
Strand 7
M
316 325anti-parallel
Strand 8
M
350 359anti-parallel
Strand 9
M
341 345anti-parallel
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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
252 254first strand
Strand 2
M
263 265anti-parallel
Strand 3
M
211 216anti-parallel
Strand 4
M
401 407anti-parallel
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There are 4 strands in ME sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
287 294first strand
Strand 2
M
300 309anti-parallel
Strand 3
M
363 371anti-parallel
Strand 4
M
333 337anti-parallel
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There are 5 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
14 19first strand
Strand 2
S
2 9anti-parallel
Strand 3
S
65 71anti-parallel
Strand 4
S
55 62anti-parallel
Strand 5
S
49 52anti-parallel
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There are 2 strands in SB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
118 119first strand
Strand 2
S
122 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il