Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGR entry

There are 4 chains in PDB entry 2VGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21LYS 233
B
 LYS 21LYS 233
C
 LYS 19LYS 233
D
 LYS 21LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2VGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 35Right-handed alpha
Helix 2
2
A
160 166Right-handed 310
Helix 3
3
A
167 186Right-handed alpha
Helix 4
4
A
191 194Right-handed 310
Helix 5
5
A
195 203Right-handed alpha
Helix 6
6
A
207 217Right-handed alpha
Helix 7
7
A
217 228Right-handed alpha
Helix 8
8
B
24 35Right-handed alpha
Helix 9
9
B
163 166Right-handed 310
Helix 10
10
B
167 186Right-handed alpha
Helix 11
11
B
191 194Right-handed 310
Helix 12
12
B
195 205Right-handed alpha
Helix 13
13
B
207 217Right-handed alpha
Helix 14
14
B
217 228Right-handed alpha
Helix 15
15
C
24 35Right-handed alpha
Helix 16
16
C
163 166Right-handed 310
Helix 17
17
C
167 186Right-handed alpha
Helix 18
18
C
191 194Right-handed 310
Helix 19
19
C
195 204Right-handed alpha
Helix 20
20
C
207 217Right-handed alpha
Helix 21
21
C
217 228Right-handed alpha
Helix 22
22
D
24 35Right-handed alpha
Helix 23
23
D
160 166Right-handed 310
Helix 24
24
D
167 186Right-handed alpha
Helix 25
25
D
191 194Right-handed 310
Helix 26
26
D
195 204Right-handed alpha
Helix 27
27
D
209 217Right-handed alpha
Helix 28
28
D
217 228Right-handed alpha
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There are 4 sheets in PDB entry 2VGR. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 49first strand
Strand 2
A
59 68anti-parallel
Strand 3
A
71 80anti-parallel
Strand 4
A
85 93anti-parallel
Strand 5
A
101 108anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
A
155 159anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 49first strand
Strand 2
B
59 68anti-parallel
Strand 3
B
71 80anti-parallel
Strand 4
B
85 93anti-parallel
Strand 5
B
101 108anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
B
155 159anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 52first strand
Strand 2
C
57 68anti-parallel
Strand 3
C
71 81anti-parallel
Strand 4
C
84 93anti-parallel
Strand 5
C
101 108anti-parallel
Strand 6
C
114 121anti-parallel
Strand 7
C
155 159anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 52first strand
Strand 2
D
57 67anti-parallel
Strand 3
D
71 81anti-parallel
Strand 4
D
84 93anti-parallel
Strand 5
D
101 108anti-parallel
Strand 6
D
114 121anti-parallel
Strand 7
D
155 159anti-parallel
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