Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2VGY entry
There are 9 chains in PDB entry 2VGY
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ASN 29 | GLY 50 |
A
|
TYR 52 | HIS 56 |
A
|
VAL 58 | ILE 101 |
A
|
GLU 103 | GLN 116 |
A
|
GLY 118 | ASN 136 |
A
|
PRO 138 | PHE 140 |
A
|
GLU 142 | ILE 154 |
A
|
LEU 156 | LEU 156 |
A
|
GLU 159 | MET 160 |
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There are 7
helices in PDB entry 2VGY. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 35 |
49 | Right-handed alpha |
Helix 2 |
2 | A
| 52 |
65 | Right-handed alpha |
Helix 3 |
3 | A
| 70 |
83 | Right-handed alpha |
Helix 4 |
4 | A
| 86 |
99 | Right-handed alpha |
Helix 5 |
5 | A
| 104 |
117 | Right-handed alpha |
Helix 6 |
6 | A
| 120 |
134 | Right-handed alpha |
Helix 7 |
7 | A
| 141 |
158 | Right-handed alpha |
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There are no sheets in PDB entry
2VGY
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il