Analysis of interatomic Contacts of Structural Units in PDB entry:
2VHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VHW entry

There are 6 chains in PDB entry 2VHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 371
B
 MET 1LEU 370
C
 MET 1ALA 371
D
 MET 1LEU 370
E
 MET 1HIS 373
F
 MET 1HIS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 2VHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
46 54Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
78 85Right-handed 310
Helix 6
6
A
96 99Right-handed 310
Helix 7
7
A
100 111Right-handed alpha
Helix 8
8
A
118 120Right-handed 310
Helix 9
9
A
130 149Right-handed alpha
Helix 10
10
A
150 154Right-handed 310
Helix 11
11
A
177 190Right-handed alpha
Helix 12
12
A
200 211Right-handed alpha
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
251 256Right-handed alpha
Helix 15
15
A
268 271Right-handed 310
Helix 16
16
A
300 304Right-handed 310
Helix 17
17
A
305 341Right-handed alpha
Helix 18
18
A
352 360Right-handed alpha
Helix 19
19
A
366 371Right-handed alpha
Helix 20
20
B
19 29Right-handed alpha
Helix 21
21
B
40 44Right-handed 310
Helix 22
22
B
46 53Right-handed alpha
Helix 23
23
B
60 68Right-handed alpha
Helix 24
24
B
78 85Right-handed 310
Helix 25
25
B
96 99Right-handed 310
Helix 26
26
B
100 111Right-handed alpha
Helix 27
27
B
118 120Right-handed 310
Helix 28
28
B
130 149Right-handed alpha
Helix 29
29
B
150 154Right-handed 310
Helix 30
30
B
177 190Right-handed alpha
Helix 31
31
B
200 211Right-handed alpha
Helix 32
32
B
221 232Right-handed alpha
Helix 33
33
B
251 257Right-handed alpha
Helix 34
34
B
268 272Right-handed 310
Helix 35
35
B
300 304Right-handed 310
Helix 36
36
B
305 341Right-handed alpha
Helix 37
37
B
352 360Right-handed alpha
Helix 38
38
B
365 370Right-handed alpha
Helix 39
39
C
19 29Right-handed alpha
Helix 40
40
C
40 44Right-handed 310
Helix 41
41
C
46 54Right-handed alpha
Helix 42
42
C
60 68Right-handed alpha
Helix 43
43
C
78 85Right-handed 310
Helix 44
44
C
96 99Right-handed 310
Helix 45
45
C
100 111Right-handed alpha
Helix 46
46
C
118 120Right-handed 310
Helix 47
47
C
130 149Right-handed alpha
Helix 48
48
C
150 154Right-handed 310
Helix 49
49
C
177 190Right-handed alpha
Helix 50
50
C
200 211Right-handed alpha
Helix 51
51
C
221 232Right-handed alpha
Helix 52
52
C
251 256Right-handed alpha
Helix 53
53
C
268 272Right-handed 310
Helix 54
54
C
300 304Right-handed 310
Helix 55
55
C
305 341Right-handed alpha
Helix 56
56
C
352 360Right-handed alpha
Helix 57
57
C
365 371Right-handed alpha
Helix 58
58
D
19 29Right-handed alpha
Helix 59
59
D
40 44Right-handed 310
Helix 60
60
D
46 53Right-handed alpha
Helix 61
61
D
60 68Right-handed alpha
Helix 62
62
D
78 85Right-handed 310
Helix 63
63
D
96 99Right-handed 310
Helix 64
64
D
100 111Right-handed alpha
Helix 65
65
D
118 120Right-handed 310
Helix 66
66
D
130 149Right-handed alpha
Helix 67
67
D
150 154Right-handed 310
Helix 68
68
D
177 190Right-handed alpha
Helix 69
69
D
200 211Right-handed alpha
Helix 70
70
D
221 232Right-handed alpha
Helix 71
71
D
251 256Right-handed alpha
Helix 72
72
D
268 272Right-handed 310
Helix 73
73
D
300 304Right-handed 310
Helix 74
74
D
305 341Right-handed alpha
Helix 75
75
D
352 360Right-handed alpha
Helix 76
76
D
365 370Right-handed alpha
Helix 77
77
E
19 29Right-handed alpha
Helix 78
78
E
40 44Right-handed 310
Helix 79
79
E
46 54Right-handed alpha
Helix 80
80
E
60 68Right-handed alpha
Helix 81
81
E
78 85Right-handed 310
Helix 82
82
E
96 99Right-handed 310
Helix 83
83
E
100 111Right-handed alpha
Helix 84
84
E
118 120Right-handed 310
Helix 85
85
E
130 149Right-handed alpha
Helix 86
86
E
150 154Right-handed 310
Helix 87
87
E
177 190Right-handed alpha
Helix 88
88
E
200 211Right-handed alpha
Helix 89
89
E
221 232Right-handed alpha
Helix 90
90
E
251 257Right-handed alpha
Helix 91
91
E
268 272Right-handed 310
Helix 92
92
E
300 304Right-handed 310
Helix 93
93
E
305 341Right-handed alpha
Helix 94
94
E
352 360Right-handed alpha
Helix 95
95
E
365 371Right-handed alpha
Helix 96
96
F
19 29Right-handed alpha
Helix 97
97
F
40 44Right-handed 310
Helix 98
98
F
46 53Right-handed alpha
Helix 99
99
F
60 68Right-handed alpha
Helix 100
100
F
78 83Right-handed alpha
Helix 101
101
F
96 99Right-handed 310
Helix 102
102
F
100 111Right-handed alpha
Helix 103
103
F
118 120Right-handed 310
Helix 104
104
F
130 149Right-handed alpha
Helix 105
105
F
150 154Right-handed 310
Helix 106
106
F
177 190Right-handed alpha
Helix 107
107
F
200 211Right-handed alpha
Helix 108
108
F
221 232Right-handed alpha
Helix 109
109
F
251 256Right-handed alpha
Helix 110
110
F
268 272Right-handed 310
Helix 111
111
F
300 304Right-handed 310
Helix 112
112
F
305 341Right-handed alpha
Helix 113
113
F
352 360Right-handed alpha
Helix 114
114
F
365 371Right-handed alpha
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There are 12 sheets in PDB entry 2VHW. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
32 36parallel
Strand 3
A
2 5parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 350anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
193 198parallel
Strand 3
A
170 174parallel
Strand 4
A
234 237parallel
Strand 5
A
263 266parallel
Strand 6
A
293 296parallel
Strand 7
A
287 290anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
32 36parallel
Strand 3
B
2 5parallel
Strand 4
B
70 72parallel
Strand 5
B
90 93parallel
Strand 6
B
113 116parallel
Strand 7
B
343 346anti-parallel
Strand 8
B
349 350anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
193 198parallel
Strand 3
B
170 174parallel
Strand 4
B
234 237parallel
Strand 5
B
263 266parallel
Strand 6
B
293 296parallel
Strand 7
B
287 290anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
32 36parallel
Strand 3
C
2 5parallel
Strand 4
C
70 72parallel
Strand 5
C
90 93parallel
Strand 6
C
113 116parallel
Strand 7
C
343 346anti-parallel
Strand 8
C
349 350anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 219first strand
Strand 2
C
193 198parallel
Strand 3
C
170 174parallel
Strand 4
C
234 237parallel
Strand 5
C
263 266parallel
Strand 6
C
293 296parallel
Strand 7
C
287 290anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 58first strand
Strand 2
D
32 36parallel
Strand 3
D
2 5parallel
Strand 4
D
70 72parallel
Strand 5
D
90 93parallel
Strand 6
D
113 116parallel
Strand 7
D
343 346anti-parallel
Strand 8
D
349 350anti-parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
216 219first strand
Strand 2
D
193 198parallel
Strand 3
D
170 174parallel
Strand 4
D
234 237parallel
Strand 5
D
263 266parallel
Strand 6
D
293 296parallel
Strand 7
D
287 290anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
32 36parallel
Strand 3
E
2 5parallel
Strand 4
E
70 72parallel
Strand 5
E
90 93parallel
Strand 6
E
113 116parallel
Strand 7
E
343 346anti-parallel
Strand 8
E
349 350anti-parallel
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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
216 219first strand
Strand 2
E
193 198parallel
Strand 3
E
170 174parallel
Strand 4
E
234 237parallel
Strand 5
E
263 266parallel
Strand 6
E
293 296parallel
Strand 7
E
287 290anti-parallel
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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 58first strand
Strand 2
F
32 36parallel
Strand 3
F
2 5parallel
Strand 4
F
70 72parallel
Strand 5
F
90 93parallel
Strand 6
F
113 116parallel
Strand 7
F
343 346anti-parallel
Strand 8
F
349 350anti-parallel
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There are 7 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
216 219first strand
Strand 2
F
193 198parallel
Strand 3
F
170 174parallel
Strand 4
F
234 237parallel
Strand 5
F
263 266parallel
Strand 6
F
293 296parallel
Strand 7
F
287 290anti-parallel
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