Analysis of interatomic Contacts of Structural Units in PDB entry:
2VIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VIG entry

There are 8 chains in PDB entry 2VIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 34SER 412
B
LEU 34ARG 411
C
LEU 34PHE 418
D
LEU 34ALA 413
E
LEU 34ALA 413
F
LEU 34ALA 413
G
LEU 34ARG 411
H
LEU 34ALA 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 2VIG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 53Right-handed alpha
Helix 2
2
A
56 64Right-handed alpha
Helix 3
3
A
67 78Right-handed alpha
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
94 109Right-handed alpha
Helix 6
6
A
109 122Right-handed alpha
Helix 7
7
A
123 131Right-handed alpha
Helix 8
8
A
132 140Right-handed alpha
Helix 9
9
A
141 144Right-handed 310
Helix 10
10
A
162 166Right-handed 310
Helix 11
11
A
259 297Right-handed alpha
Helix 12
12
A
307 337Right-handed alpha
Helix 13
13
A
341 368Right-handed alpha
Helix 14
14
A
369 372Right-handed 310
Helix 15
15
A
377 389Right-handed alpha
Helix 16
16
A
394 412Right-handed alpha
Helix 17
17
B
35 53Right-handed alpha
Helix 18
18
B
56 63Right-handed alpha
Helix 19
19
B
67 78Right-handed alpha
Helix 20
20
B
85 89Right-handed 310
Helix 21
21
B
94 109Right-handed alpha
Helix 22
22
B
109 122Right-handed alpha
Helix 23
23
B
123 131Right-handed alpha
Helix 24
24
B
132 140Right-handed alpha
Helix 25
25
B
141 144Right-handed 310
Helix 26
26
B
162 166Right-handed 310
Helix 27
27
B
259 297Right-handed alpha
Helix 28
28
B
307 337Right-handed alpha
Helix 29
29
B
341 368Right-handed alpha
Helix 30
30
B
369 372Right-handed 310
Helix 31
31
B
377 388Right-handed alpha
Helix 32
32
B
394 411Right-handed alpha
Helix 33
33
C
35 53Right-handed alpha
Helix 34
34
C
56 64Right-handed alpha
Helix 35
35
C
67 78Right-handed alpha
Helix 36
36
C
85 89Right-handed 310
Helix 37
37
C
94 109Right-handed alpha
Helix 38
38
C
109 122Right-handed alpha
Helix 39
39
C
123 131Right-handed alpha
Helix 40
40
C
132 140Right-handed alpha
Helix 41
41
C
141 144Right-handed 310
Helix 42
42
C
162 166Right-handed 310
Helix 43
43
C
259 297Right-handed alpha
Helix 44
44
C
307 337Right-handed alpha
Helix 45
45
C
341 368Right-handed alpha
Helix 46
46
C
369 372Right-handed 310
Helix 47
47
C
377 386Right-handed alpha
Helix 48
48
C
387 390Right-handed 310
Helix 49
49
C
394 416Right-handed alpha
Helix 50
50
D
35 53Right-handed alpha
Helix 51
51
D
56 64Right-handed alpha
Helix 52
52
D
67 77Right-handed alpha
Helix 53
53
D
85 89Right-handed 310
Helix 54
54
D
94 109Right-handed alpha
Helix 55
55
D
109 122Right-handed alpha
Helix 56
56
D
123 131Right-handed alpha
Helix 57
57
D
132 140Right-handed alpha
Helix 58
58
D
141 144Right-handed 310
Helix 59
59
D
162 166Right-handed 310
Helix 60
60
D
259 297Right-handed alpha
Helix 61
61
D
307 337Right-handed alpha
Helix 62
62
D
341 368Right-handed alpha
Helix 63
63
D
369 372Right-handed 310
Helix 64
64
D
377 388Right-handed alpha
Helix 65
65
D
394 413Right-handed alpha
Helix 66
66
E
35 53Right-handed alpha
Helix 67
67
E
56 64Right-handed alpha
Helix 68
68
E
67 78Right-handed alpha
Helix 69
69
E
85 89Right-handed 310
Helix 70
70
E
94 109Right-handed alpha
Helix 71
71
E
109 122Right-handed alpha
Helix 72
72
E
123 131Right-handed alpha
Helix 73
73
E
132 140Right-handed alpha
Helix 74
74
E
141 144Right-handed 310
Helix 75
75
E
162 166Right-handed 310
Helix 76
76
E
259 297Right-handed alpha
Helix 77
77
E
307 337Right-handed alpha
Helix 78
78
E
341 368Right-handed alpha
Helix 79
79
E
369 372Right-handed 310
Helix 80
80
E
377 388Right-handed alpha
Helix 81
81
E
394 413Right-handed alpha
Helix 82
82
F
35 53Right-handed alpha
Helix 83
83
F
56 64Right-handed alpha
Helix 84
84
F
67 78Right-handed alpha
Helix 85
85
F
85 89Right-handed 310
Helix 86
86
F
94 109Right-handed alpha
Helix 87
87
F
109 122Right-handed alpha
Helix 88
88
F
123 131Right-handed alpha
Helix 89
89
F
132 140Right-handed alpha
Helix 90
90
F
141 144Right-handed 310
Helix 91
91
F
162 166Right-handed 310
Helix 92
92
F
259 297Right-handed alpha
Helix 93
93
F
307 337Right-handed alpha
Helix 94
94
F
341 368Right-handed alpha
Helix 95
95
F
369 372Right-handed 310
Helix 96
96
F
377 388Right-handed alpha
Helix 97
97
F
394 413Right-handed alpha
Helix 98
98
G
35 53Right-handed alpha
Helix 99
99
G
56 63Right-handed alpha
Helix 100
100
G
67 77Right-handed alpha
Helix 101
101
G
85 89Right-handed 310
Helix 102
102
G
94 109Right-handed alpha
Helix 103
103
G
109 122Right-handed alpha
Helix 104
104
G
123 131Right-handed alpha
Helix 105
105
G
132 140Right-handed alpha
Helix 106
106
G
141 144Right-handed 310
Helix 107
107
G
162 166Right-handed 310
Helix 108
108
G
206 208Right-handed 310
Helix 109
109
G
259 297Right-handed alpha
Helix 110
110
G
307 337Right-handed alpha
Helix 111
111
G
341 368Right-handed alpha
Helix 112
112
G
369 372Right-handed 310
Helix 113
113
G
377 389Right-handed alpha
Helix 114
114
G
394 411Right-handed alpha
Helix 115
115
H
35 53Right-handed alpha
Helix 116
116
H
56 64Right-handed alpha
Helix 117
117
H
67 77Right-handed alpha
Helix 118
118
H
85 89Right-handed 310
Helix 119
119
H
94 109Right-handed alpha
Helix 120
120
H
109 122Right-handed alpha
Helix 121
121
H
123 131Right-handed alpha
Helix 122
122
H
132 140Right-handed alpha
Helix 123
123
H
141 144Right-handed 310
Helix 124
124
H
162 166Right-handed 310
Helix 125
125
H
259 297Right-handed alpha
Helix 126
126
H
307 337Right-handed alpha
Helix 127
127
H
341 368Right-handed alpha
Helix 128
128
H
369 372Right-handed 310
Helix 129
129
H
377 389Right-handed alpha
Helix 130
130
H
394 413Right-handed alpha
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There are 24 sheets in PDB entry 2VIG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 153first strand
Strand 2
A
194 200parallel
Strand 3
A
210 216anti-parallel
Strand 4
A
253 254anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 173first strand
Strand 2
A
176 187anti-parallel
Strand 3
A
238 249anti-parallel
Strand 4
A
222 224anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
298 299first strand
Strand 2
A
302 303anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 153first strand
Strand 2
B
194 200parallel
Strand 3
B
210 216anti-parallel
Strand 4
B
253 254anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 173first strand
Strand 2
B
176 187anti-parallel
Strand 3
B
238 249anti-parallel
Strand 4
B
222 224anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
298 299first strand
Strand 2
B
302 303anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
151 153first strand
Strand 2
C
194 200parallel
Strand 3
C
210 216anti-parallel
Strand 4
C
253 254anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 173first strand
Strand 2
C
176 187anti-parallel
Strand 3
C
238 249anti-parallel
Strand 4
C
222 224anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
298 299first strand
Strand 2
C
302 303anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 153first strand
Strand 2
D
194 200parallel
Strand 3
D
210 216anti-parallel
Strand 4
D
253 254anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
169 173first strand
Strand 2
D
176 187anti-parallel
Strand 3
D
238 249anti-parallel
Strand 4
D
222 224anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
298 299first strand
Strand 2
D
302 303anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
150 153first strand
Strand 2
E
194 200parallel
Strand 3
E
210 216anti-parallel
Strand 4
E
253 254anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
169 173first strand
Strand 2
E
176 187anti-parallel
Strand 3
E
238 249anti-parallel
Strand 4
E
222 224anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
298 299first strand
Strand 2
E
302 303anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
150 153first strand
Strand 2
F
194 200parallel
Strand 3
F
210 216anti-parallel
Strand 4
F
253 254anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
169 173first strand
Strand 2
F
176 187anti-parallel
Strand 3
F
238 249anti-parallel
Strand 4
F
222 224anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
298 299first strand
Strand 2
F
302 303anti-parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
150 153first strand
Strand 2
G
194 200parallel
Strand 3
G
210 216anti-parallel
Strand 4
G
253 254anti-parallel
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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 173first strand
Strand 2
G
176 187anti-parallel
Strand 3
G
238 249anti-parallel
Strand 4
G
222 224anti-parallel
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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
298 299first strand
Strand 2
G
302 303anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
150 153first strand
Strand 2
H
194 200parallel
Strand 3
H
210 216anti-parallel
Strand 4
H
253 254anti-parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
169 173first strand
Strand 2
H
176 187anti-parallel
Strand 3
H
238 249anti-parallel
Strand 4
H
222 224anti-parallel
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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
298 299first strand
Strand 2
H
302 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il