Analysis of interatomic Contacts of Structural Units in PDB entry:
2VJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VJ0 entry

There are 3 chains in PDB entry 2VJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 693PHE 938
P
 PRO 2GLU 9
Q
 PHE 1PRO 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2VJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
700 707Right-handed alpha
Helix 2
2
A
759 765Right-handed alpha
Helix 3
3
A
821 824Right-handed 310
Helix 4
4
A
832 842Right-handed alpha
Helix 5
5
A
845 847Right-handed 310
Helix 6
6
A
861 873Right-handed alpha
Helix 7
7
A
923 936Right-handed alpha
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There are 4 sheets in PDB entry 2VJ0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 718first strand
Strand 2
A
722 731anti-parallel
Strand 3
A
734 743anti-parallel
Strand 4
A
782 791anti-parallel
Strand 5
A
766 769anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 757first strand
Strand 2
A
800 807anti-parallel
Strand 3
A
810 817anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
826 828first strand
Strand 2
A
887 894anti-parallel
Strand 3
A
875 876anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
826 828first strand
Strand 2
A
887 894anti-parallel
Strand 3
A
899 909anti-parallel
Strand 4
A
914 921anti-parallel
Strand 5
A
849 855anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il