Analysis of interatomic Contacts of Structural Units in PDB entry:
2VJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VJJ entry

There is 1 chain in PDB entry 2VJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 112VAL 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
112 120Right-handed alpha
Helix 2
2
A
122 126Right-handed 310
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
142 147Right-handed alpha
Helix 5
5
A
152 155Right-handed 310
Helix 6
6
A
172 186Right-handed alpha
Helix 7
7
A
206 212Right-handed 310
Helix 8
8
A
234 237Right-handed 310
Helix 9
9
A
251 255Right-handed 310
Helix 10
10
A
363 367Right-handed alpha
Helix 11
11
A
397 401Right-handed 310
Helix 12
12
A
619 623Right-handed 310
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There are 7 sheets in PDB entry 2VJJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 18 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
221 227parallel
Strand 3
A
260 265parallel
Strand 4
A
293 297parallel
Strand 5
A
321 325parallel
Strand 6
A
350 354parallel
Strand 7
A
377 382parallel
Strand 8
A
410 415parallel
Strand 9
A
441 446parallel
Strand 10
A
482 487parallel
Strand 11
A
511 514parallel
Strand 12
A
537 541parallel
Strand 13
A
570 574parallel
Strand 14
A
598 603parallel
Strand 15
A
625 639parallel
Strand 16
A
697 707anti-parallel
Strand 17
A
659 663anti-parallel
Strand 18
A
675 680anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
290 292parallel
Strand 3
A
317 319parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
438 440parallel
Strand 3
A
479 481parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 536first strand
Strand 2
A
565 569parallel
Strand 3
A
594 596parallel
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There are 12 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
228 233parallel
Strand 3
A
267 271parallel
Strand 4
A
299 303parallel
Strand 5
A
326 330parallel
Strand 6
A
355 359parallel
Strand 7
A
383 388parallel
Strand 8
A
416 421parallel
Strand 9
A
447 452parallel
Strand 10
A
488 492parallel
Strand 11
A
516 519parallel
Strand 12
A
545 547parallel
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There are 14 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
241 246parallel
Strand 3
A
282 288parallel
Strand 4
A
309 312parallel
Strand 5
A
340 346parallel
Strand 6
A
368 374parallel
Strand 7
A
390 396parallel
Strand 8
A
422 430parallel
Strand 9
A
462 468parallel
Strand 10
A
498 505parallel
Strand 11
A
522 525parallel
Strand 12
A
557 562parallel
Strand 13
A
585 589parallel
Strand 14
A
613 617parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 650first strand
Strand 2
A
684 692anti-parallel
Strand 3
A
670 672anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il