Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VL7 entry

There is 1 chain in PDB entry 2VL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9ALA 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2VL7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
38 51Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
141 145Right-handed 310
Helix 6
6
A
152 157Right-handed alpha
Helix 7
7
A
157 165Right-handed alpha
Helix 8
8
A
173 175Right-handed 310
Helix 9
9
A
183 195Right-handed 310
Helix 10
10
A
199 216Right-handed alpha
Helix 11
11
A
221 237Right-handed alpha
Helix 12
12
A
254 270Right-handed alpha
Helix 13
13
A
279 290Right-handed alpha
Helix 14
14
A
307 316Right-handed alpha
Helix 15
15
A
361 363Right-handed 310
Helix 16
16
A
364 382Right-handed alpha
Helix 17
17
A
393 402Right-handed alpha
Helix 18
18
A
417 427Right-handed alpha
Helix 19
19
A
468 483Right-handed alpha
Helix 20
20
A
485 506Right-handed alpha
Helix 21
21
A
519 526Right-handed 310
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There are 3 sheets in PDB entry 2VL7. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
147 151parallel
Strand 3
A
53 58parallel
Strand 4
A
177 181parallel
Strand 5
A
322 326parallel
Strand 6
A
28 32parallel
Strand 7
A
338 342parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
300 304anti-parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
244 247anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
431 435parallel
Strand 3
A
386 391parallel
Strand 4
A
453 459parallel
Strand 5
A
514 518parallel
Strand 6
A
351 354parallel
Strand 7
A
537 538parallel
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