Analysis of interatomic Contacts of Structural Units in PDB entry:
2VLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VLF entry

There are 2 chains in PDB entry 2VLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 456
B
 MET 1ILE 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2VLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
57 65Right-handed alpha
Helix 5
5
A
74 89Right-handed alpha
Helix 6
6
A
98 111Right-handed alpha
Helix 7
7
A
123 133Right-handed alpha
Helix 8
8
A
142 147Right-handed 310
Helix 9
9
A
159 171Right-handed alpha
Helix 10
10
A
193 207Right-handed alpha
Helix 11
11
A
217 229Right-handed alpha
Helix 12
12
A
236 246Right-handed alpha
Helix 13
13
A
271 286Right-handed alpha
Helix 14
14
A
295 309Right-handed alpha
Helix 15
15
A
311 332Right-handed alpha
Helix 16
16
A
349 353Right-handed alpha
Helix 17
17
A
357 360Right-handed 310
Helix 18
18
A
361 375Right-handed alpha
Helix 19
19
A
382 387Right-handed alpha
Helix 20
20
A
413 429Right-handed alpha
Helix 21
21
A
430 434Right-handed 310
Helix 22
22
A
446 450Right-handed 310
Helix 23
23
B
20 31Right-handed alpha
Helix 24
24
B
34 38Right-handed 310
Helix 25
25
B
39 43Right-handed 310
Helix 26
26
B
57 65Right-handed alpha
Helix 27
27
B
74 89Right-handed alpha
Helix 28
28
B
98 111Right-handed alpha
Helix 29
29
B
123 133Right-handed alpha
Helix 30
30
B
142 147Right-handed 310
Helix 31
31
B
159 171Right-handed alpha
Helix 32
32
B
193 207Right-handed alpha
Helix 33
33
B
217 229Right-handed alpha
Helix 34
34
B
236 247Right-handed alpha
Helix 35
35
B
271 286Right-handed alpha
Helix 36
36
B
295 310Right-handed alpha
Helix 37
37
B
311 332Right-handed alpha
Helix 38
38
B
349 353Right-handed alpha
Helix 39
39
B
357 360Right-handed 310
Helix 40
40
B
361 375Right-handed alpha
Helix 41
41
B
382 387Right-handed alpha
Helix 42
42
B
413 430Right-handed alpha
Helix 43
43
B
431 434Right-handed 310
Helix 44
44
B
446 451Right-handed alpha
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There are 7 sheets in PDB entry 2VLF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
376 377parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
211 214parallel
Strand 5
A
175 181parallel
Strand 6
A
116 119parallel
Strand 7
A
136 139parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
402 406anti-parallel
Strand 3
A
379 381anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
452 455anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
376 381parallel
Strand 3
B
402 406anti-parallel
Strand 4
B
344 348anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
265 269anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
210 214parallel
Strand 5
B
175 181parallel
Strand 6
B
116 119parallel
Strand 7
B
136 139parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 441first strand
Strand 2
B
452 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il