Analysis of interatomic Contacts of Structural Units in PDB entry:
2VMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VMF entry

There are 2 chains in PDB entry 2VMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 28	LYS 864
B	GLY 27	HIS 867

There are 50 helices in PDB entry 2VMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	58	66	Right-handed alpha
Helix 2	2	A	81	87	Right-handed 310
Helix 3	3	A	98	103	Right-handed alpha
Helix 4	4	A	158	169	Right-handed alpha
Helix 5	5	A	185	189	Right-handed 310
Helix 6	6	A	192	197	Right-handed 310
Helix 7	7	A	368	372	Right-handed 310
Helix 8	8	A	373	387	Right-handed alpha
Helix 9	9	A	402	413	Right-handed alpha
Helix 10	10	A	430	449	Right-handed alpha
Helix 11	11	A	462	470	Right-handed alpha
Helix 12	12	A	471	475	Right-handed 310
Helix 13	13	A	477	493	Right-handed alpha
Helix 14	14	A	494	504	Right-handed alpha
Helix 15	15	A	522	525	Right-handed 310
Helix 16	16	A	541	547	Right-handed 310
Helix 17	17	A	563	571	Right-handed alpha
Helix 18	18	A	572	576	Right-handed 310
Helix 19	19	A	580	586	Right-handed alpha
Helix 20	20	A	591	604	Right-handed alpha
Helix 21	21	A	609	635	Right-handed alpha
Helix 22	22	A	666	676	Right-handed alpha
Helix 23	23	A	748	753	Right-handed alpha
Helix 24	24	A	778	782	Right-handed 310
Helix 25	25	A	858	863	Right-handed 310
Helix 26	26	B	58	66	Right-handed alpha
Helix 27	27	B	78	87	Right-handed 310
Helix 28	28	B	98	103	Right-handed alpha
Helix 29	29	B	142	145	Right-handed 310
Helix 30	30	B	158	171	Right-handed alpha
Helix 31	31	B	184	189	Right-handed 310
Helix 32	32	B	192	197	Right-handed 310
Helix 33	33	B	368	372	Right-handed 310
Helix 34	34	B	373	387	Right-handed alpha
Helix 35	35	B	402	412	Right-handed alpha
Helix 36	36	B	430	449	Right-handed alpha
Helix 37	37	B	462	470	Right-handed alpha
Helix 38	38	B	477	493	Right-handed alpha
Helix 39	39	B	494	504	Right-handed alpha
Helix 40	40	B	521	525	Right-handed 310
Helix 41	41	B	541	547	Right-handed 310
Helix 42	42	B	563	571	Right-handed alpha
Helix 43	43	B	572	576	Right-handed 310
Helix 44	44	B	580	586	Right-handed alpha
Helix 45	45	B	591	604	Right-handed alpha
Helix 46	46	B	609	635	Right-handed alpha
Helix 47	47	B	666	676	Right-handed alpha
Helix 48	48	B	748	753	Right-handed alpha
Helix 49	49	B	778	782	Right-handed 310
Helix 50	50	B	858	863	Right-handed 310

There are 26 sheets in PDB entry 2VMF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	137	140	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	89	97	anti-parallel
Strand 4	A	148	156	anti-parallel
Strand 5	A	117	122	anti-parallel
Strand 6	A	125	131	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	208	209	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	233	first strand
Strand 2	A	237	248	anti-parallel
Strand 3	A	281	292	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	278	first strand
Strand 2	A	254	264	anti-parallel
Strand 3	A	308	315	anti-parallel
Strand 4	A	320	328	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	347	350	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	454	458	parallel
Strand 3	A	415	419	parallel
Strand 4	A	391	394	parallel
Strand 5	A	357	362	parallel
Strand 6	A	641	644	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	A	552	555	parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	686	first strand
Strand 2	A	689	696	anti-parallel
Strand 3	A	734	742	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	730	first strand
Strand 2	A	702	713	anti-parallel
Strand 3	A	755	762	anti-parallel
Strand 4	A	768	775	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	796	first strand
Strand 2	A	799	805	anti-parallel
Strand 3	A	837	842	anti-parallel
Strand 4	A	823	824	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	831	first strand
Strand 2	A	810	816	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	41	44	anti-parallel
Strand 3	B	89	97	anti-parallel
Strand 4	B	148	157	anti-parallel
Strand 5	B	117	122	anti-parallel
Strand 6	B	125	129	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	208	209	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	233	first strand
Strand 2	B	237	248	anti-parallel
Strand 3	B	281	292	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	278	first strand
Strand 2	B	254	264	anti-parallel
Strand 3	B	308	316	anti-parallel
Strand 4	B	319	328	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	353	355	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 6 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	454	458	parallel
Strand 3	B	415	419	parallel
Strand 4	B	391	394	parallel
Strand 5	B	357	362	parallel
Strand 6	B	641	644	parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	531	first strand
Strand 2	B	553	555	parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	686	first strand
Strand 2	B	689	696	anti-parallel
Strand 3	B	734	742	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	730	first strand
Strand 2	B	702	713	anti-parallel
Strand 3	B	755	762	anti-parallel
Strand 4	B	768	775	anti-parallel

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There are 4 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	796	first strand
Strand 2	B	799	805	anti-parallel
Strand 3	B	837	842	anti-parallel
Strand 4	B	823	824	anti-parallel

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There are 3 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	831	first strand
Strand 2	B	810	816	anti-parallel
Strand 3	B	855	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VMF