Analysis of interatomic Contacts of Structural Units in PDB entry:
2VN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VN4 entry

There is 1 chain in PDB entry 2VN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2VN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 19Right-handed alpha
Helix 2
2
A
52 69Right-handed alpha
Helix 3
3
A
71 91Right-handed alpha
Helix 4
4
A
101 106Right-handed 310
Helix 5
5
A
125 145Right-handed alpha
Helix 6
6
A
147 155Right-handed alpha
Helix 7
7
A
155 170Right-handed alpha
Helix 8
8
A
186 207Right-handed alpha
Helix 9
9
A
210 225Right-handed alpha
Helix 10
10
A
250 259Right-handed alpha
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
275 291Right-handed alpha
Helix 13
13
A
293 297Right-handed 310
Helix 14
14
A
314 318Right-handed 310
Helix 15
15
A
321 343Right-handed alpha
Helix 16
16
A
351 359Right-handed alpha
Helix 17
17
A
371 394Right-handed alpha
Helix 18
18
A
419 434Right-handed alpha
Helix 19
19
A
443 448Right-handed 310
Helix 20
20
A
519 523Right-handed 310
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There are 8 sheets in PDB entry 2VN4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
108 109anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
238 239anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
365 368anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
413 414anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 552first strand
Strand 2
A
496 504anti-parallel
Strand 3
A
590 596parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
512 517anti-parallel
Strand 3
A
556 564anti-parallel
Strand 4
A
578 581anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
512 517anti-parallel
Strand 3
A
556 564anti-parallel
Strand 4
A
570 572anti-parallel
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