Analysis of interatomic Contacts of Structural Units in PDB entry:
2VN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VN9 entry

There are 2 chains in PDB entry 2VN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER -1LEU 309
B
SER -1LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2VN9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
-1 13Right-handed alpha
Helix 2
2
A
51 68Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
109 130Right-handed alpha
Helix 5
5
A
138 140Right-handed 310
Helix 6
6
A
177 181Right-handed 310
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
193 210Right-handed alpha
Helix 9
9
A
218 229Right-handed alpha
Helix 10
10
A
236 241Right-handed 310
Helix 11
11
A
242 253Right-handed alpha
Helix 12
12
A
262 267Right-handed alpha
Helix 13
13
A
269 274Right-handed alpha
Helix 14
14
A
274 279Right-handed alpha
Helix 15
15
A
284 300Right-handed alpha
Helix 16
16
B
-1 13Right-handed alpha
Helix 17
17
B
51 68Right-handed alpha
Helix 18
18
B
97 104Right-handed alpha
Helix 19
19
B
109 130Right-handed alpha
Helix 20
20
B
138 140Right-handed 310
Helix 21
21
B
177 181Right-handed 310
Helix 22
22
B
182 187Right-handed alpha
Helix 23
23
B
193 210Right-handed alpha
Helix 24
24
B
218 228Right-handed alpha
Helix 25
25
B
242 253Right-handed alpha
Helix 26
26
B
262 267Right-handed alpha
Helix 27
27
B
269 274Right-handed alpha
Helix 28
28
B
274 279Right-handed alpha
Helix 29
29
B
284 300Right-handed alpha
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There are 6 sheets in PDB entry 2VN9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 22first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
85 91anti-parallel
Strand 5
A
76 82anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 133first strand
Strand 2
A
162 163anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 144first strand
Strand 2
A
153 155anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 22first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
39 46anti-parallel
Strand 4
B
85 91anti-parallel
Strand 5
B
76 82anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
132 133first strand
Strand 2
B
162 163anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
142 144first strand
Strand 2
B
153 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il