Analysis of interatomic Contacts of Structural Units in PDB entry:
2VNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VNE entry

There are 2 chains in PDB entry 2VNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19HIS 194
B
 SER 40HIS 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 64Right-handed alpha
Helix 2
2
A
65 70Right-handed 310
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
131 134Right-handed 310
Helix 5
5
A
167 172Right-handed alpha
Helix 6
6
A
177 192Right-handed alpha
Helix 7
7
B
55 65Right-handed alpha
Helix 8
8
B
66 70Right-handed 310
Helix 9
9
B
71 76Right-handed alpha
Helix 10
10
B
131 134Right-handed 310
Helix 11
11
B
167 172Right-handed alpha
Helix 12
12
B
177 192Right-handed alpha
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There are 2 sheets in PDB entry 2VNE. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 52first strand
Strand 2
A
152 163anti-parallel
Strand 3
A
136 149anti-parallel
Strand 4
A
121 129anti-parallel
Strand 5
A
107 116anti-parallel
Strand 6
A
94 99anti-parallel
Strand 7
A
80 86anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 52first strand
Strand 2
B
153 163anti-parallel
Strand 3
B
136 147anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
107 116anti-parallel
Strand 6
B
94 98anti-parallel
Strand 7
B
82 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il