Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOM entry

There are 4 chains in PDB entry 2VOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4GLN 248
B
 SER 3GLN 248
C
 SER 3LYS 247
D
 ARG 4ASN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2VOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
47 55Right-handed alpha
Helix 4
4
A
79 86Right-handed alpha
Helix 5
5
A
95 101Right-handed alpha
Helix 6
6
A
105 119Right-handed alpha
Helix 7
7
A
130 136Right-handed alpha
Helix 8
8
A
138 153Right-handed alpha
Helix 9
9
A
156 158Right-handed 310
Helix 10
10
A
166 170Right-handed 310
Helix 11
11
A
177 196Right-handed alpha
Helix 12
12
A
197 204Right-handed alpha
Helix 13
13
A
216 222Right-handed alpha
Helix 14
14
A
232 237Right-handed 310
Helix 15
15
A
238 245Right-handed alpha
Helix 16
16
B
17 31Right-handed alpha
Helix 17
17
B
44 46Right-handed 310
Helix 18
18
B
47 55Right-handed alpha
Helix 19
19
B
79 86Right-handed alpha
Helix 20
20
B
95 101Right-handed alpha
Helix 21
21
B
105 119Right-handed alpha
Helix 22
22
B
130 136Right-handed alpha
Helix 23
23
B
138 152Right-handed alpha
Helix 24
24
B
156 158Right-handed 310
Helix 25
25
B
177 196Right-handed alpha
Helix 26
26
B
197 204Right-handed alpha
Helix 27
27
B
216 223Right-handed alpha
Helix 28
28
B
232 237Right-handed 310
Helix 29
29
B
238 245Right-handed alpha
Helix 30
30
C
17 31Right-handed alpha
Helix 31
31
C
44 46Right-handed 310
Helix 32
32
C
47 55Right-handed alpha
Helix 33
33
C
79 86Right-handed alpha
Helix 34
34
C
95 101Right-handed alpha
Helix 35
35
C
105 119Right-handed alpha
Helix 36
36
C
130 136Right-handed alpha
Helix 37
37
C
138 152Right-handed alpha
Helix 38
38
C
156 158Right-handed 310
Helix 39
39
C
177 196Right-handed alpha
Helix 40
40
C
197 204Right-handed alpha
Helix 41
41
C
216 222Right-handed alpha
Helix 42
42
C
232 237Right-handed 310
Helix 43
43
C
238 245Right-handed alpha
Helix 44
44
D
17 31Right-handed alpha
Helix 45
45
D
44 46Right-handed 310
Helix 46
46
D
47 55Right-handed alpha
Helix 47
47
D
79 86Right-handed alpha
Helix 48
48
D
95 101Right-handed alpha
Helix 49
49
D
105 119Right-handed alpha
Helix 50
50
D
130 136Right-handed alpha
Helix 51
51
D
138 152Right-handed alpha
Helix 52
52
D
156 158Right-handed 310
Helix 53
53
D
177 196Right-handed alpha
Helix 54
54
D
197 204Right-handed alpha
Helix 55
55
D
216 222Right-handed alpha
Helix 56
56
D
232 237Right-handed 310
Helix 57
57
D
238 244Right-handed alpha
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There are 4 sheets in PDB entry 2VOM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
37 42parallel
Strand 3
A
60 63parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
160 164parallel
Strand 7
A
205 208parallel
Strand 8
A
228 231parallel
Strand 9
A
6 11parallel
Strand 10
A
6 11first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
37 42parallel
Strand 3
B
60 63parallel
Strand 4
B
90 93parallel
Strand 5
B
122 127parallel
Strand 6
B
160 164parallel
Strand 7
B
206 208parallel
Strand 8
B
228 231parallel
Strand 9
B
6 11parallel
Strand 10
B
6 11first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
37 42parallel
Strand 3
C
60 63parallel
Strand 4
C
90 93parallel
Strand 5
C
122 127parallel
Strand 6
C
160 164parallel
Strand 7
C
206 208parallel
Strand 8
C
228 231parallel
Strand 9
C
37 42first strand
Strand 10
C
6 11parallel
Strand 11
C
60 63first strand
Strand 12
C
37 42parallel
Strand 13
C
90 93first strand
Strand 14
C
60 63parallel
Strand 15
C
122 127first strand
Strand 16
C
90 93parallel
Strand 17
C
160 164first strand
Strand 18
C
122 127parallel
Strand 19
C
206 208first strand
Strand 20
C
160 164parallel
Strand 21
C
228 231first strand
Strand 22
C
6 11parallel
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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
37 42parallel
Strand 3
D
37 42parallel
Strand 4
D
6 11parallel
Strand 5
D
60 63first strand
Strand 6
D
37 42parallel
Strand 7
D
90 93first strand
Strand 8
D
60 63parallel
Strand 9
D
122 127first strand
Strand 10
D
90 93parallel
Strand 11
D
160 164first strand
Strand 12
D
122 127parallel
Strand 13
D
206 208first strand
Strand 14
D
160 164parallel
Strand 15
D
228 231first strand
Strand 16
D
6 11parallel
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