Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQQ entry

There are 2 chains in PDB entry 2VQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7GLU 405
B
 ARG 7GLU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2VQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
50 54Right-handed alpha
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
73 79Right-handed alpha
Helix 6
6
A
117 143Right-handed alpha
Helix 7
7
A
172 186Right-handed alpha
Helix 8
8
A
200 207Right-handed alpha
Helix 9
9
A
238 242Right-handed 310
Helix 10
10
A
259 270Right-handed alpha
Helix 11
11
A
270 279Right-handed alpha
Helix 12
12
A
305 317Right-handed alpha
Helix 13
14
A
333 349Right-handed alpha
Helix 14
15
A
357 362Right-handed alpha
Helix 15
16
A
366 381Right-handed alpha
Helix 16
17
A
384 388Right-handed 310
Helix 17
18
A
397 404Right-handed alpha
Helix 18
19
B
15 19Right-handed 310
Helix 19
20
B
36 48Right-handed alpha
Helix 20
21
B
49 54Right-handed alpha
Helix 21
22
B
63 68Right-handed alpha
Helix 22
23
B
72 81Right-handed alpha
Helix 23
24
B
117 143Right-handed alpha
Helix 24
25
B
172 186Right-handed alpha
Helix 25
26
B
200 207Right-handed alpha
Helix 26
27
B
222 225Right-handed 310
Helix 27
28
B
238 242Right-handed 310
Helix 28
29
B
259 270Right-handed alpha
Helix 29
30
B
270 279Right-handed alpha
Helix 30
31
B
305 317Right-handed alpha
Helix 31
32
B
318 322Right-handed 310
Helix 32
33
B
333 349Right-handed alpha
Helix 33
34
B
357 362Right-handed alpha
Helix 34
35
B
366 381Right-handed alpha
Helix 35
36
B
384 388Right-handed 310
Helix 36
37
B
397 404Right-handed alpha
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There are 2 sheets in PDB entry 2VQQ. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
10 13parallel
Strand 3
A
148 151parallel
Strand 4
A
324 328parallel
Strand 5
A
282 287parallel
Strand 6
A
190 194parallel
Strand 7
A
213 220parallel
Strand 8
A
245 250parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
10 13parallel
Strand 3
B
148 151parallel
Strand 4
B
324 328parallel
Strand 5
B
282 287parallel
Strand 6
B
190 194parallel
Strand 7
B
213 220parallel
Strand 8
B
245 250parallel
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