Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRE entry

There are 3 chains in PDB entry 2VRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18THR 289
B
 MET 23VAL 282
C
 SER 22VAL 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2VRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 52Right-handed 310
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
93 103Right-handed alpha
Helix 4
4
A
108 133Right-handed alpha
Helix 5
5
A
147 154Right-handed alpha
Helix 6
6
A
170 174Right-handed 310
Helix 7
7
A
181 190Right-handed alpha
Helix 8
8
A
192 203Right-handed alpha
Helix 9
9
A
208 214Right-handed alpha
Helix 10
10
A
223 240Right-handed alpha
Helix 11
11
A
242 259Right-handed alpha
Helix 12
12
A
260 276Right-handed alpha
Helix 13
13
A
278 288Right-handed alpha
Helix 14
14
B
48 52Right-handed 310
Helix 15
15
B
56 73Right-handed alpha
Helix 16
16
B
93 103Right-handed alpha
Helix 17
17
B
108 133Right-handed alpha
Helix 18
18
B
147 155Right-handed alpha
Helix 19
19
B
170 175Right-handed 310
Helix 20
20
B
181 190Right-handed alpha
Helix 21
21
B
192 203Right-handed alpha
Helix 22
22
B
208 214Right-handed alpha
Helix 23
23
B
223 240Right-handed alpha
Helix 24
24
B
242 259Right-handed alpha
Helix 25
25
B
260 276Right-handed alpha
Helix 26
26
C
48 52Right-handed 310
Helix 27
27
C
56 72Right-handed alpha
Helix 28
28
C
93 103Right-handed alpha
Helix 29
29
C
108 133Right-handed alpha
Helix 30
30
C
147 155Right-handed alpha
Helix 31
31
C
170 175Right-handed alpha
Helix 32
32
C
181 190Right-handed alpha
Helix 33
33
C
192 203Right-handed alpha
Helix 34
34
C
208 214Right-handed alpha
Helix 35
35
C
223 240Right-handed alpha
Helix 36
36
C
242 259Right-handed alpha
Helix 37
37
C
260 276Right-handed alpha
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There are 6 sheets in PDB entry 2VRE. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
137 141parallel
Strand 5
A
158 162parallel
Strand 6
A
219 221parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
166 168parallel
Strand 3
A
205 207anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
78 83parallel
Strand 4
B
137 141parallel
Strand 5
B
158 162parallel
Strand 6
B
219 221parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
166 168parallel
Strand 3
B
205 207anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 38first strand
Strand 2
C
41 46anti-parallel
Strand 3
C
78 83parallel
Strand 4
C
137 141parallel
Strand 5
C
158 162parallel
Strand 6
C
219 221parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 146first strand
Strand 2
C
166 168parallel
Strand 3
C
205 207anti-parallel
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