Analysis of interatomic Contacts of Structural Units in PDB entry:
2VTX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VTX entry

There are 10 chains in PDB entry 2VTX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 16VAL 118
B
LEU 17ALA 119
C
ASP 16VAL 118
D
LEU 17VAL 118
E
ASP 16VAL 118
G
ASP 16ALA 119
H
ASP 16HIS 117
I
ASP 16VAL 118
J
LEU 17VAL 118
K
LEU 17ALA 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2VTX


There are 23 sheets in PDB entry 2VTX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, EA, EB, GA, GB, HA, HB, IA, IB, JA, JB, KA, KB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 23first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
45 52anti-parallel
Strand 4
A
95 96anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 23first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
45 52anti-parallel
Strand 4
A
88 90anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 32first strand
Strand 2
A
100 106anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
75 81anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 23first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
44 52anti-parallel
Strand 4
B
95 96anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 23first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
44 52anti-parallel
Strand 4
B
88 90anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 32first strand
Strand 2
B
100 106anti-parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
74 81anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 23first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
95 96anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 23first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
88 90anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 32first strand
Strand 2
C
100 106anti-parallel
Strand 3
C
61 66anti-parallel
Strand 4
C
75 81anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
18 23first strand
Strand 2
D
111 117anti-parallel
Strand 3
D
45 52anti-parallel
Strand 4
D
88 90anti-parallel
Strand 5
D
45 52anti-parallel
Strand 6
D
95 96anti-parallel
Strand 7
D
45 52anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 32first strand
Strand 2
D
100 106anti-parallel
Strand 3
D
61 66anti-parallel
Strand 4
D
75 81anti-parallel
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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 23first strand
Strand 2
E
111 118anti-parallel
Strand 3
E
44 52anti-parallel
Strand 4
E
88 90anti-parallel
Strand 5
E
44 52anti-parallel
Strand 6
E
95 96anti-parallel
Strand 7
E
44 52anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
29 32first strand
Strand 2
E
100 106anti-parallel
Strand 3
E
61 66anti-parallel
Strand 4
E
75 81anti-parallel
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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
18 23first strand
Strand 2
G
111 118anti-parallel
Strand 3
G
44 52anti-parallel
Strand 4
G
88 90anti-parallel
Strand 5
G
44 52anti-parallel
Strand 6
G
95 96anti-parallel
Strand 7
G
44 52anti-parallel
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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
29 32first strand
Strand 2
G
100 106anti-parallel
Strand 3
G
61 67anti-parallel
Strand 4
G
74 81anti-parallel
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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
17 23first strand
Strand 2
H
111 117anti-parallel
Strand 3
H
45 52anti-parallel
Strand 4
H
88 90anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
95 96anti-parallel
Strand 7
H
45 52anti-parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
29 32first strand
Strand 2
H
100 106anti-parallel
Strand 3
H
61 67anti-parallel
Strand 4
H
74 81anti-parallel
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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
18 23first strand
Strand 2
I
111 117anti-parallel
Strand 3
I
45 52anti-parallel
Strand 4
I
88 90anti-parallel
Strand 5
I
45 52anti-parallel
Strand 6
I
95 96anti-parallel
Strand 7
I
45 52anti-parallel
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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
29 32first strand
Strand 2
I
100 106anti-parallel
Strand 3
I
61 69anti-parallel
Strand 4
I
72 81anti-parallel
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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
18 23first strand
Strand 2
J
111 117anti-parallel
Strand 3
J
45 52anti-parallel
Strand 4
J
88 90anti-parallel
Strand 5
J
45 52anti-parallel
Strand 6
J
95 96anti-parallel
Strand 7
J
45 52anti-parallel
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There are 4 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
29 32first strand
Strand 2
J
100 106anti-parallel
Strand 3
J
61 69anti-parallel
Strand 4
J
72 81anti-parallel
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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
18 23first strand
Strand 2
K
111 118anti-parallel
Strand 3
K
44 52anti-parallel
Strand 4
K
88 90anti-parallel
Strand 5
K
44 52anti-parallel
Strand 6
K
95 96anti-parallel
Strand 7
K
44 52anti-parallel
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There are 4 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
29 32first strand
Strand 2
K
100 106anti-parallel
Strand 3
K
61 66anti-parallel
Strand 4
K
76 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il