Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VUM entry

There are 18 chains in PDB entry 2VUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 1455
B	ASP 20	PHE 1224
C	GLU 3	ASP 268
D	SER 4	TYR 221
E	ASP 2	MET 215
F	LYS 72	LEU 155
G	MET 1	ILE 171
H	SER 2	ARG 146
I	THR 2	GLN 120
J	MET 1	PRO 65
K	MET 1	LEU 114
L	ALA 25	ARG 70
M	ASN 1	ASN 1
M	GLY 5	GLY 7
N	A 1	T 13
P	A 1	C 10
T	A 4	C 21
T	G 23	T 28

There are139 helices in PDB entry 2VUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	119	128	Right-handed alpha
Helix 4	4	A	130	143	Right-handed alpha
Helix 5	5	A	203	214	Right-handed alpha
Helix 6	6	A	215	220	Right-handed alpha
Helix 7	7	A	230	233	Right-handed 310
Helix 8	8	A	261	266	Right-handed alpha
Helix 9	9	A	266	278	Right-handed alpha
Helix 10	10	A	289	305	Right-handed alpha
Helix 11	11	A	324	329	Right-handed 310
Helix 12	12	A	335	340	Right-handed alpha
Helix 13	13	A	368	372	Right-handed alpha
Helix 14	14	A	384	394	Right-handed alpha
Helix 15	15	A	451	453	Right-handed 310
Helix 16	16	A	474	479	Right-handed alpha
Helix 17	17	A	494	505	Right-handed alpha
Helix 18	18	A	506	511	Right-handed alpha
Helix 19	19	A	524	536	Right-handed alpha
Helix 20	20	A	543	553	Right-handed alpha
Helix 21	21	A	574	580	Right-handed alpha
Helix 22	22	A	618	623	Right-handed alpha
Helix 23	23	A	628	638	Right-handed alpha
Helix 24	24	A	638	661	Right-handed alpha
Helix 25	25	A	665	670	Right-handed 310
Helix 26	26	A	674	696	Right-handed alpha
Helix 27	27	A	711	735	Right-handed alpha
Helix 28	28	A	741	749	Right-handed alpha
Helix 29	29	A	754	763	Right-handed alpha
Helix 30	30	A	793	798	Right-handed alpha
Helix 31	31	A	809	827	Right-handed alpha
Helix 32	32	A	829	844	Right-handed alpha
Helix 33	33	A	867	871	Right-handed 310
Helix 34	34	A	874	876	Right-handed 310
Helix 35	35	A	884	887	Right-handed 310
Helix 36	36	A	889	898	Right-handed alpha
Helix 37	37	A	915	920	Right-handed alpha
Helix 38	38	A	924	944	Right-handed alpha
Helix 39	39	A	959	971	Right-handed alpha
Helix 40	40	A	982	995	Right-handed alpha
Helix 41	41	A	1004	1014	Right-handed alpha
Helix 42	42	A	1016	1025	Right-handed alpha
Helix 43	43	A	1027	1034	Right-handed alpha
Helix 44	44	A	1038	1057	Right-handed alpha
Helix 45	45	A	1063	1078	Right-handed alpha
Helix 46	46	A	1096	1106	Right-handed alpha
Helix 47	47	A	1127	1139	Right-handed alpha
Helix 48	48	A	1163	1166	Right-handed 310
Helix 49	49	A	1167	1172	Right-handed alpha
Helix 50	50	A	1199	1205	Right-handed alpha
Helix 51	51	A	1208	1221	Right-handed alpha
Helix 52	52	A	1255	1260	Right-handed alpha
Helix 53	53	A	1261	1269	Right-handed alpha
Helix 54	54	A	1331	1357	Right-handed alpha
Helix 55	55	A	1358	1360	Right-handed 310
Helix 56	56	A	1365	1378	Right-handed alpha
Helix 57	57	A	1388	1392	Right-handed 310
Helix 58	58	A	1395	1400	Right-handed alpha
Helix 59	59	A	1404	1414	Right-handed alpha
Helix 60	60	A	1423	1431	Right-handed alpha
Helix 61	61	A	1448	1453	Right-handed alpha
Helix 62	62	B	26	41	Right-handed alpha
Helix 63	63	B	44	56	Right-handed alpha
Helix 64	64	B	58	64	Right-handed alpha
Helix 65	65	B	113	121	Right-handed alpha
Helix 66	66	B	179	183	Right-handed 310
Helix 67	67	B	185	191	Right-handed alpha
Helix 68	68	B	282	288	Right-handed alpha
Helix 69	69	B	296	302	Right-handed alpha
Helix 70	70	B	307	322	Right-handed alpha
Helix 71	71	B	326	333	Right-handed alpha
Helix 72	72	B	346	358	Right-handed alpha
Helix 73	73	B	370	390	Right-handed alpha
Helix 74	74	B	400	402	Right-handed 310
Helix 75	75	B	408	426	Right-handed alpha
Helix 76	76	B	427	432	Right-handed alpha
Helix 77	77	B	453	463	Right-handed alpha
Helix 78	78	B	487	496	Right-handed alpha
Helix 79	79	B	551	556	Right-handed alpha
Helix 80	80	B	593	607	Right-handed alpha
Helix 81	81	B	619	621	Right-handed 310
Helix 82	82	B	654	665	Right-handed alpha
Helix 83	83	B	680	687	Right-handed alpha
Helix 84	84	B	695	699	Right-handed alpha
Helix 85	85	B	744	748	Right-handed 310
Helix 86	86	B	752	756	Right-handed 310
Helix 87	87	B	758	762	Right-handed 310
Helix 88	88	B	763	774	Right-handed alpha
Helix 89	89	B	775	777	Right-handed 310
Helix 90	90	B	783	788	Right-handed 310
Helix 91	91	B	806	812	Right-handed 310
Helix 92	92	B	813	817	Right-handed 310
Helix 93	93	B	842	848	Right-handed alpha
Helix 94	94	B	1013	1017	Right-handed 310
Helix 95	95	B	1023	1039	Right-handed alpha
Helix 96	96	B	1051	1063	Right-handed alpha
Helix 97	97	B	1098	1102	Right-handed 310
Helix 98	98	B	1121	1125	Right-handed 310
Helix 99	99	B	1131	1142	Right-handed alpha
Helix 100	100	B	1143	1152	Right-handed alpha
Helix 101	101	B	1197	1210	Right-handed alpha
Helix 102	102	C	26	40	Right-handed alpha
Helix 103	103	C	59	70	Right-handed alpha
Helix 104	104	C	74	80	Right-handed 310
Helix 105	105	C	116	118	Right-handed 310
Helix 106	106	C	196	201	Right-handed alpha
Helix 107	107	C	204	210	Right-handed 310
Helix 108	108	C	241	264	Right-handed alpha
Helix 109	109	D	30	34	Right-handed 310
Helix 110	110	D	53	70	Right-handed alpha
Helix 111	111	D	118	122	Right-handed 310
Helix 112	112	D	129	134	Right-handed alpha
Helix 113	113	D	138	151	Right-handed alpha
Helix 114	114	D	156	168	Right-handed alpha
Helix 115	115	D	174	183	Right-handed alpha
Helix 116	116	D	187	195	Right-handed alpha
Helix 117	117	D	203	216	Right-handed alpha
Helix 118	118	E	6	28	Right-handed alpha
Helix 119	119	E	31	36	Right-handed alpha
Helix 120	120	E	39	44	Right-handed alpha
Helix 121	121	E	54	58	Right-handed 310
Helix 122	122	E	67	72	Right-handed alpha
Helix 123	123	E	90	104	Right-handed alpha
Helix 124	124	E	136	140	Right-handed 310
Helix 125	125	E	157	169	Right-handed alpha
Helix 126	126	E	182	188	Right-handed alpha
Helix 127	127	F	86	103	Right-handed alpha
Helix 128	128	F	116	127	Right-handed alpha
Helix 129	129	G	14	18	Right-handed 310
Helix 130	130	G	21	34	Right-handed alpha
Helix 131	131	H	83	87	Right-handed 310
Helix 132	132	I	59	64	Right-handed 310
Helix 133	133	J	16	27	Right-handed alpha
Helix 134	134	J	31	40	Right-handed alpha
Helix 135	135	J	43	52	Right-handed alpha
Helix 136	136	J	56	61	Right-handed alpha
Helix 137	137	K	5	9	Right-handed 310
Helix 138	138	K	42	49	Right-handed alpha
Helix 139	139	K	82	111	Right-handed alpha

There are 46 sheets in PDB entry 2VUM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, FA, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, CA, CB, CC, CD, A, EA, EB, GA, GB, GC, HA, HB, IA, IB, KA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	B	1215	1217	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	235	238	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 14 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	B	1104	1106	anti-parallel
Strand 3	A	363	367	first strand
Strand 4	A	455	463	parallel
Strand 5	A	442	445	anti-parallel
Strand 6	A	455	463	anti-parallel
Strand 7	A	455	463	first strand
Strand 8	A	363	367	parallel
Strand 9	A	467	470	anti-parallel
Strand 10	A	348	355	parallel
Strand 11	A	486	490	anti-parallel
Strand 12	A	348	355	anti-parallel
Strand 13	B	1104	1106	anti-parallel
Strand 14	A	348	355	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	407	anti-parallel
Strand 4	A	411	414	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1283	1287	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1141	1142	first strand
Strand 2	A	1272	1274	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1237	1238	first strand
Strand 2	A	1194	1197	anti-parallel
Strand 3	A	1147	1153	anti-parallel
Strand 4	I	42	45	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1226	first strand
Strand 2	A	1240	1241	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	133	137	anti-parallel
Strand 3	A	1441	1445	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	68	73	anti-parallel
Strand 6	G	8	13	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	165	171	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	109	110	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	209	211	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	633	639	anti-parallel
Strand 5	B	703	704	first strand
Strand 6	B	740	742	parallel
Strand 7	B	633	639	anti-parallel

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There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	617	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	861	anti-parallel
Strand 3	B	963	972	anti-parallel
Strand 4	B	948	955	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	827	first strand
Strand 2	B	1080	1093	anti-parallel
Strand 3	B	1070	1073	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	981	first strand
Strand 2	B	987	992	anti-parallel
Strand 3	B	838	841	parallel
Strand 4	B	1010	1011	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	935	936	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1191	1195	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	228	232	anti-parallel
Strand 4	C	176	179	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	157	160	anti-parallel
Strand 3	C	45	49	anti-parallel
Strand 4	L	67	68	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	153	154	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	43	46	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	106	111	parallel
Strand 4	E	131	134	parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	206	214	parallel
Strand 3	E	195	202	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	76	79	anti-parallel
Strand 3	G	43	48	anti-parallel
Strand 4	G	38	39	anti-parallel

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There are 10 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	95	first strand
Strand 2	G	142	152	anti-parallel
Strand 3	G	98	102	first strand
Strand 4	G	86	95	anti-parallel
Strand 5	G	108	111	first strand
Strand 6	G	98	102	anti-parallel
Strand 7	G	142	152	first strand
Strand 8	G	86	95	anti-parallel
Strand 9	G	157	162	first strand
Strand 10	G	108	111	parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	121	first strand
Strand 2	G	130	131	anti-parallel
Strand 3	G	136	137	anti-parallel

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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	60	first strand
Strand 2	H	4	16	anti-parallel
Strand 3	H	24	30	anti-parallel
Strand 4	H	37	42	anti-parallel
Strand 5	H	123	125	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	106	first strand
Strand 2	H	112	117	anti-parallel

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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	18	first strand
Strand 2	I	25	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	86	anti-parallel
Strand 3	I	100	103	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUM