Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VUW entry

There is 1 chain in PDB entry 2VUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 470LYS 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2VUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
474 479Right-handed alpha
Helix 2
2
A
480 486Right-handed alpha
Helix 3
3
A
528 545Right-handed alpha
Helix 4
4
A
546 548Right-handed 310
Helix 5
5
A
570 584Right-handed alpha
Helix 6
6
A
613 616Right-handed 310
Helix 7
7
A
621 644Right-handed alpha
Helix 8
8
A
651 653Right-handed 310
Helix 9
9
A
708 712Right-handed 310
Helix 10
10
A
716 730Right-handed alpha
Helix 11
11
A
738 755Right-handed alpha
Helix 12
12
A
764 781Right-handed alpha
Helix 13
13
A
782 784Right-handed 310
Helix 14
14
A
786 794Right-handed alpha
Helix 15
15
A
795 798Right-handed 310
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There are 4 sheets in PDB entry 2VUW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 493first strand
Strand 2
A
496 503anti-parallel
Strand 3
A
506 515anti-parallel
Strand 4
A
599 606anti-parallel
Strand 5
A
559 566anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
655 659anti-parallel
Strand 3
A
681 685anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 669first strand
Strand 2
A
672 677anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 695first strand
Strand 2
A
698 700anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il