Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VVD entry

There is 1 chain in PDB entry 2VVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 166GLY 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2VVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
186 193Right-handed alpha
Helix 2
2
A
203 207Right-handed 310
Helix 3
3
A
223 227Right-handed 310
Helix 4
4
A
266 270Right-handed 310
Helix 5
5
A
294 302Right-handed alpha
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There are 2 sheets in PDB entry 2VVD. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
211 219anti-parallel
Strand 4
A
271 277anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
282 290anti-parallel
Strand 3
A
237 242anti-parallel
Strand 4
A
251 254anti-parallel
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