Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VVE entry

There are 2 chains in PDB entry 2VVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 84THR 335
B
 GLU 85THR 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2VVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
134 138Right-handed 310
Helix 2
2
A
185 192Right-handed alpha
Helix 3
3
A
202 206Right-handed 310
Helix 4
4
A
222 226Right-handed 310
Helix 5
5
A
265 269Right-handed 310
Helix 6
6
A
293 301Right-handed alpha
Helix 7
7
A
319 324Right-handed alpha
Helix 8
8
B
185 192Right-handed alpha
Helix 9
9
B
202 206Right-handed 310
Helix 10
10
B
222 226Right-handed 310
Helix 11
11
B
293 301Right-handed alpha
Helix 12
12
B
319 324Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2VVE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 100first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
114 120anti-parallel
Strand 4
A
150 153anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
159 162anti-parallel
Strand 3
A
125 128anti-parallel
Strand 4
A
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
310 317anti-parallel
Strand 3
A
210 218anti-parallel
Strand 4
A
270 276anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
281 289anti-parallel
Strand 3
A
236 241anti-parallel
Strand 4
A
250 254anti-parallel
Strand 5
B
256 260parallel
Strand 6
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 100first strand
Strand 2
B
326 334anti-parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
150 153anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
159 162anti-parallel
Strand 3
B
125 128anti-parallel
Strand 4
B
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
310 317anti-parallel
Strand 3
B
210 218anti-parallel
Strand 4
B
271 276anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
281 289anti-parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
250 253anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il