Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VVM entry

There are 2 chains in PDB entry 2VVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 487
B
 MET 1GLY 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2VVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 61Right-handed alpha
Helix 2
2
A
99 109Right-handed alpha
Helix 3
3
A
141 158Right-handed alpha
Helix 4
4
A
179 185Right-handed alpha
Helix 5
5
A
187 196Right-handed alpha
Helix 6
6
A
197 199Right-handed 310
Helix 7
7
A
200 216Right-handed alpha
Helix 8
8
A
223 234Right-handed alpha
Helix 9
9
A
237 247Right-handed alpha
Helix 10
10
A
253 267Right-handed alpha
Helix 11
11
A
309 316Right-handed 310
Helix 12
12
A
323 333Right-handed alpha
Helix 13
13
A
347 351Right-handed 310
Helix 14
14
A
394 404Right-handed alpha
Helix 15
15
A
436 447Right-handed alpha
Helix 16
16
A
456 460Right-handed 310
Helix 17
17
A
466 486Right-handed alpha
Helix 18
18
B
48 61Right-handed alpha
Helix 19
19
B
99 109Right-handed alpha
Helix 20
20
B
141 158Right-handed alpha
Helix 21
21
B
179 185Right-handed alpha
Helix 22
22
B
187 196Right-handed alpha
Helix 23
23
B
197 199Right-handed 310
Helix 24
24
B
200 216Right-handed alpha
Helix 25
25
B
223 234Right-handed alpha
Helix 26
26
B
237 247Right-handed alpha
Helix 27
27
B
253 268Right-handed alpha
Helix 28
28
B
309 316Right-handed 310
Helix 29
29
B
323 333Right-handed alpha
Helix 30
30
B
347 351Right-handed 310
Helix 31
31
B
384 388Right-handed 310
Helix 32
32
B
394 404Right-handed alpha
Helix 33
33
B
436 447Right-handed alpha
Helix 34
34
B
456 460Right-handed 310
Helix 35
35
B
466 486Right-handed alpha
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There are 10 sheets in PDB entry 2VVM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
7 10anti-parallel
Strand 3
A
412 417anti-parallel
Strand 4
A
339 345anti-parallel
Strand 5
A
377 383anti-parallel
Strand 6
A
365 371anti-parallel
Strand 7
A
353 357anti-parallel
Strand 8
A
127 131parallel
Strand 9
A
138 140anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
65 68parallel
Strand 3
A
40 45parallel
Strand 4
A
298 306parallel
Strand 5
A
289 293anti-parallel
Strand 6
A
279 284anti-parallel
Strand 7
A
317 319parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
65 68parallel
Strand 3
A
40 45parallel
Strand 4
A
298 306parallel
Strand 5
A
452 454parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
86 89anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
248 250anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
7 10anti-parallel
Strand 3
B
412 417anti-parallel
Strand 4
B
339 345anti-parallel
Strand 5
B
377 383anti-parallel
Strand 6
B
365 371anti-parallel
Strand 7
B
353 357anti-parallel
Strand 8
B
127 131parallel
Strand 9
B
138 140anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
65 68parallel
Strand 3
B
42 45parallel
Strand 4
B
303 306parallel
Strand 5
B
452 454parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
86 89anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
248 250anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
279 285anti-parallel
Strand 4
B
317 319parallel
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