Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWE entry

There are 6 chains in PDB entry 2VWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11LYS 108
B
 GLN 11LYS 108
C
 GLU 1CYS 213
E
 GLN 1PRO 212
J
 GLU 1CYS 213
L
 GLN 1PRO 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
B
16 25Right-handed alpha
Helix 3
3
C
79 83Right-handed 310
Helix 4
4
C
120 125Right-handed alpha
Helix 5
5
C
182 186Right-handed alpha
Helix 6
6
E
28 32Right-handed 310
Helix 7
7
E
83 87Right-handed 310
Helix 8
8
J
120 125Right-handed alpha
Helix 9
9
J
181 186Right-handed alpha
Helix 10
10
L
28 32Right-handed 310
Helix 11
11
L
61 64Right-handed 310
Helix 12
12
L
83 87Right-handed 310
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There are 23 sheets in PDB entry 2VWE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, CA, CB, CC, CD, EA, EB, EC, ED, EE, JA, JB, JC, JD, LA, LB, LC, LD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
B
66 83parallel
Strand 3
B
46 48anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
B
66 83parallel
Strand 3
B
89 105anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
51 58anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
66 82anti-parallel
Strand 3
A
89 105anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
66 82anti-parallel
Strand 3
B
14 15parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 34first strand
Strand 2
B
51 58anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 65anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
102 106parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
44 48anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
128 138anti-parallel
Strand 3
C
172 181anti-parallel
Strand 4
C
158 162anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 154first strand
Strand 2
C
144 149anti-parallel
Strand 3
C
190 196anti-parallel
Strand 4
C
204 209anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
68 72anti-parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
107 111parallel
Strand 3
E
89 95anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 52anti-parallel
Strand 6
E
56 59anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
107 111parallel
Strand 3
E
89 95anti-parallel
Strand 4
E
100 103anti-parallel
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There are 9 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 123first strand
Strand 2
E
140 145anti-parallel
Strand 3
E
174 184anti-parallel
Strand 4
E
135 137anti-parallel
Strand 5
E
174 184anti-parallel
Strand 6
E
163 165anti-parallel
Strand 7
E
174 184anti-parallel
Strand 8
E
169 171anti-parallel
Strand 9
E
174 184anti-parallel
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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
151 154first strand
Strand 2
E
194 198anti-parallel
Strand 3
E
208 209anti-parallel
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There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 13first strand
Strand 2
J
102 106parallel
Strand 3
J
85 90anti-parallel
Strand 4
J
33 38anti-parallel
Strand 5
J
44 48anti-parallel
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There are 3 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 24first strand
Strand 2
J
70 75anti-parallel
Strand 3
J
62 66anti-parallel
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There are 4 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
115 117first strand
Strand 2
J
129 138anti-parallel
Strand 3
J
172 180anti-parallel
Strand 4
J
158 162anti-parallel
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There are 4 strands in JD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
152 153first strand
Strand 2
J
144 149anti-parallel
Strand 3
J
191 197anti-parallel
Strand 4
J
200 208anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 5first strand
Strand 2
L
18 25anti-parallel
Strand 3
L
77 82anti-parallel
Strand 4
L
67 72anti-parallel
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There are 9 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
107 111parallel
Strand 3
L
89 95anti-parallel
Strand 4
L
57 59first strand
Strand 5
L
45 51anti-parallel
Strand 6
L
33 39anti-parallel
Strand 7
L
89 95anti-parallel
Strand 8
L
100 103anti-parallel
Strand 9
L
89 95anti-parallel
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There are 9 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
120 123first strand
Strand 2
L
140 145anti-parallel
Strand 3
L
174 184anti-parallel
Strand 4
L
135 137anti-parallel
Strand 5
L
174 184anti-parallel
Strand 6
L
163 165anti-parallel
Strand 7
L
174 184anti-parallel
Strand 8
L
169 171anti-parallel
Strand 9
L
174 184anti-parallel
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There are 3 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
151 154first strand
Strand 2
L
193 198anti-parallel
Strand 3
L
208 210anti-parallel
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