Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VZ9 entry

There is 1 chain in PDB entry 2VZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 1349

There are171 helices in PDB entry 2VZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	28	Right-handed alpha
Helix 2	2	A	43	47	Right-handed 310
Helix 3	3	A	68	74	Right-handed alpha
Helix 4	4	A	76	92	Right-handed alpha
Helix 5	5	A	96	100	Right-handed 310
Helix 6	6	A	114	121	Right-handed alpha
Helix 7	7	A	129	135	Right-handed 310
Helix 8	8	A	137	149	Right-handed alpha
Helix 9	9	A	163	177	Right-handed alpha
Helix 10	10	A	193	203	Right-handed alpha
Helix 11	11	A	266	275	Right-handed alpha
Helix 12	12	A	277	281	Right-handed 310
Helix 13	13	A	299	313	Right-handed alpha
Helix 14	14	A	325	330	Right-handed alpha
Helix 15	15	A	332	334	Right-handed 310
Helix 16	16	A	336	350	Right-handed alpha
Helix 17	17	A	430	444	Right-handed alpha
Helix 18	18	A	447	459	Right-handed alpha
Helix 19	19	A	513	527	Right-handed alpha
Helix 20	20	A	529	531	Right-handed 310
Helix 21	21	A	533	540	Right-handed alpha
Helix 22	22	A	542	547	Right-handed alpha
Helix 23	23	A	549	570	Right-handed alpha
Helix 24	24	A	582	591	Right-handed alpha
Helix 25	25	A	595	613	Right-handed alpha
Helix 26	26	A	626	634	Right-handed alpha
Helix 27	27	A	655	668	Right-handed alpha
Helix 28	28	A	685	688	Right-handed 310
Helix 29	29	A	690	702	Right-handed alpha
Helix 30	30	A	718	724	Right-handed 310
Helix 31	31	A	731	741	Right-handed alpha
Helix 32	32	A	745	751	Right-handed alpha
Helix 33	33	A	767	774	Right-handed alpha
Helix 34	34	A	791	807	Right-handed alpha
Helix 35	35	A	812	815	Right-handed 310
Helix 36	36	A	830	834	Right-handed 310
Helix 37	37	A	871	876	Right-handed 310
Helix 38	38	A	887	903	Right-handed alpha
Helix 39	39	A	906	910	Right-handed 310
Helix 40	30	A	966	970	Right-handed 310
Helix 41	41	A	989	999	Right-handed alpha
Helix 42	42	A	1005	1008	Right-handed 310
Helix 43	43	A	1027	1041	Right-handed alpha
Helix 44	44	A	1060	1068	Right-handed alpha
Helix 45	45	A	1134	1151	Right-handed alpha
Helix 46	46	A	1182	1195	Right-handed alpha
Helix 47	47	A	1200	1211	Right-handed alpha
Helix 48	48	A	1224	1236	Right-handed alpha
Helix 49	49	A	1254	1264	Right-handed alpha
Helix 50	50	A	1279	1282	Right-handed alpha
Helix 51	51	A	1284	1292	Right-handed alpha
Helix 52	52	A	1306	1310	Right-handed 310
Helix 53	53	A	1327	1336	Right-handed alpha
Helix 54	54	A	1354	1362	Right-handed alpha
Helix 55	55	A	1374	1385	Right-handed alpha
Helix 56	56	A	1424	1432	Right-handed alpha
Helix 57	57	A	1452	1461	Right-handed alpha
Helix 58	58	A	1464	1468	Right-handed 310
Helix 59	59	A	1491	1500	Right-handed alpha
Helix 60	60	A	1549	1554	Right-handed alpha
Helix 61	61	A	1557	1562	Right-handed alpha
Helix 62	62	A	1572	1581	Right-handed alpha
Helix 63	63	A	1584	1588	Right-handed 310
Helix 64	64	A	1629	1631	Right-handed 310
Helix 65	65	A	1641	1647	Right-handed alpha
Helix 66	66	A	1649	1660	Right-handed alpha
Helix 67	67	A	1678	1691	Right-handed alpha
Helix 68	68	A	1701	1712	Right-handed alpha
Helix 69	69	A	1716	1718	Right-handed 310
Helix 70	70	A	1726	1735	Right-handed alpha
Helix 71	71	A	1750	1759	Right-handed alpha
Helix 72	72	A	1771	1776	Right-handed alpha
Helix 73	73	A	1783	1787	Right-handed 310
Helix 74	74	A	1795	1799	Right-handed 310
Helix 75	75	A	1804	1820	Right-handed alpha
Helix 76	76	A	1835	1845	Right-handed alpha
Helix 77	77	A	1894	1907	Right-handed alpha
Helix 78	78	A	1922	1935	Right-handed alpha
Helix 79	79	A	1948	1962	Right-handed alpha
Helix 80	80	A	1984	1993	Right-handed alpha
Helix 81	81	A	1995	2009	Right-handed alpha
Helix 82	82	A	2022	2026	Right-handed alpha
Helix 83	83	A	2031	2051	Right-handed alpha
Helix 84	84	A	2067	2072	Right-handed alpha
Helix 85	85	A	2087	2100	Right-handed alpha
Helix 86	86	B	19	28	Right-handed alpha
Helix 87	87	B	43	47	Right-handed 310
Helix 88	88	B	68	74	Right-handed alpha
Helix 89	89	B	76	92	Right-handed alpha
Helix 90	90	B	96	100	Right-handed 310
Helix 91	91	B	114	121	Right-handed alpha
Helix 92	92	B	129	135	Right-handed 310
Helix 93	93	B	137	149	Right-handed alpha
Helix 94	94	B	163	177	Right-handed alpha
Helix 95	95	B	193	203	Right-handed alpha
Helix 96	96	B	266	275	Right-handed alpha
Helix 97	97	B	277	281	Right-handed 310
Helix 98	98	B	299	313	Right-handed alpha
Helix 99	99	B	325	330	Right-handed alpha
Helix 100	100	B	332	334	Right-handed 310
Helix 101	101	B	336	350	Right-handed alpha
Helix 102	102	B	430	444	Right-handed alpha
Helix 103	103	B	447	459	Right-handed alpha
Helix 104	104	B	513	527	Right-handed alpha
Helix 105	105	B	529	531	Right-handed 310
Helix 106	106	B	533	540	Right-handed alpha
Helix 107	107	B	542	547	Right-handed alpha
Helix 108	108	B	549	570	Right-handed alpha
Helix 109	109	B	582	591	Right-handed alpha
Helix 110	110	B	595	613	Right-handed alpha
Helix 111	111	B	626	634	Right-handed alpha
Helix 112	112	B	655	668	Right-handed alpha
Helix 113	113	B	685	688	Right-handed 310
Helix 114	114	B	690	702	Right-handed alpha
Helix 115	115	B	718	724	Right-handed 310
Helix 116	116	B	731	741	Right-handed alpha
Helix 117	117	B	745	751	Right-handed alpha
Helix 118	118	B	767	774	Right-handed alpha
Helix 119	119	B	791	807	Right-handed alpha
Helix 120	120	B	812	815	Right-handed 310
Helix 121	121	B	830	834	Right-handed 310
Helix 122	122	B	871	876	Right-handed 310
Helix 123	123	B	887	903	Right-handed alpha
Helix 124	124	B	906	910	Right-handed 310
Helix 125	125	B	966	970	Right-handed 310
Helix 126	126	B	989	999	Right-handed alpha
Helix 127	127	B	1005	1008	Right-handed 310
Helix 128	128	B	1027	1041	Right-handed alpha
Helix 129	129	B	1060	1068	Right-handed alpha
Helix 130	130	B	1134	1154	Right-handed alpha
Helix 131	131	B	1182	1195	Right-handed alpha
Helix 132	132	B	1199	1211	Right-handed alpha
Helix 133	133	B	1224	1236	Right-handed alpha
Helix 134	134	B	1254	1264	Right-handed alpha
Helix 135	135	B	1279	1282	Right-handed alpha
Helix 136	136	B	1284	1292	Right-handed alpha
Helix 137	137	B	1306	1310	Right-handed 310
Helix 138	138	B	1327	1336	Right-handed alpha
Helix 139	139	B	1354	1362	Right-handed alpha
Helix 140	140	B	1364	1368	Right-handed alpha
Helix 141	141	B	1374	1385	Right-handed alpha
Helix 142	142	B	1424	1432	Right-handed alpha
Helix 143	143	B	1452	1461	Right-handed alpha
Helix 144	144	B	1464	1468	Right-handed 310
Helix 145	145	B	1491	1500	Right-handed alpha
Helix 146	146	B	1549	1554	Right-handed alpha
Helix 147	147	B	1557	1562	Right-handed alpha
Helix 148	148	B	1572	1581	Right-handed alpha
Helix 149	149	B	1584	1588	Right-handed 310
Helix 150	150	B	1629	1631	Right-handed 310
Helix 151	151	B	1641	1647	Right-handed alpha
Helix 152	152	B	1649	1660	Right-handed alpha
Helix 153	153	B	1678	1691	Right-handed alpha
Helix 154	154	B	1701	1712	Right-handed alpha
Helix 155	155	B	1716	1718	Right-handed 310
Helix 156	156	B	1726	1735	Right-handed alpha
Helix 157	157	B	1750	1759	Right-handed alpha
Helix 158	158	B	1771	1776	Right-handed alpha
Helix 159	159	B	1783	1787	Right-handed 310
Helix 160	160	B	1795	1799	Right-handed 310
Helix 161	161	B	1804	1820	Right-handed alpha
Helix 162	162	B	1835	1845	Right-handed alpha
Helix 163	163	B	1894	1907	Right-handed alpha
Helix 164	164	B	1922	1935	Right-handed alpha
Helix 165	165	B	1948	1962	Right-handed alpha
Helix 166	166	B	1984	1993	Right-handed alpha
Helix 167	167	B	1995	2009	Right-handed alpha
Helix 168	168	B	2022	2026	Right-handed alpha
Helix 169	169	B	2031	2051	Right-handed alpha
Helix 170	170	B	2067	2072	Right-handed alpha
Helix 171	171	B	2087	2100	Right-handed alpha

There are 33 sheets in PDB entry 2VZ9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 22 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	320	324	parallel
Strand 3	A	288	292	parallel
Strand 4	A	387	394	parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	244	253	anti-parallel
Strand 7	A	4	13	anti-parallel
Strand 8	A	224	235	anti-parallel
Strand 9	A	181	190	anti-parallel
Strand 10	A	105	111	parallel
Strand 11	A	153	158	parallel
Strand 12	B	153	158	anti-parallel
Strand 13	B	105	111	parallel
Strand 14	B	181	190	parallel
Strand 15	B	224	235	anti-parallel
Strand 16	B	4	13	anti-parallel
Strand 17	B	244	253	anti-parallel
Strand 18	B	398	406	anti-parallel
Strand 19	B	387	394	anti-parallel
Strand 20	B	288	292	parallel
Strand 21	B	320	324	parallel
Strand 22	B	374	377	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	224	235	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	428	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	479	484	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	713	first strand
Strand 2	A	576	579	parallel
Strand 3	A	491	496	parallel
Strand 4	A	756	761	parallel
Strand 5	A	779	783	parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	675	first strand
Strand 2	A	618	624	anti-parallel
Strand 3	A	648	654	anti-parallel
Strand 4	A	639	645	anti-parallel
Strand 5	A	743	744	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	729	730	anti-parallel

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There are 12 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	865	first strand
Strand 2	A	930	938	anti-parallel
Strand 3	A	943	949	anti-parallel
Strand 4	A	952	961	anti-parallel
Strand 5	A	911	920	anti-parallel
Strand 6	A	1049	1060	anti-parallel
Strand 7	A	1093	1103	anti-parallel
Strand 8	A	1087	1091	anti-parallel
Strand 9	A	1075	1083	anti-parallel
Strand 10	A	1018	1024	anti-parallel
Strand 11	A	1009	1014	anti-parallel
Strand 12	A	986	988	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	925	first strand
Strand 2	A	883	886	anti-parallel
Strand 3	A	877	881	anti-parallel
Strand 4	A	1000	1004	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	A	1075	1083	anti-parallel

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There are 13 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1413	1418	first strand
Strand 2	A	1440	1445	parallel
Strand 3	A	1471	1476	parallel
Strand 4	A	1502	1507	parallel
Strand 5	A	1510	1518	anti-parallel
Strand 6	A	1115	1123	anti-parallel
Strand 7	A	2104	2111	anti-parallel
Strand 8	A	2055	2061	parallel
Strand 9	A	2014	2021	parallel
Strand 10	A	1965	1971	parallel
Strand 11	A	1886	1891	parallel
Strand 12	A	1910	1916	parallel
Strand 13	A	1937	1943	parallel

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There are 8 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1125	1129	first strand
Strand 2	A	1387	1395	parallel
Strand 3	A	1399	1406	anti-parallel
Strand 4	A	1342	1349	anti-parallel
Strand 5	A	1313	1319	parallel
Strand 6	A	1241	1247	parallel
Strand 7	A	1269	1276	parallel
Strand 8	A	1294	1298	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1525	1529	first strand
Strand 2	A	1872	1876	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1531	1535	first strand
Strand 2	A	1544	1548	anti-parallel

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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1827	1832	first strand
Strand 2	A	1850	1856	parallel
Strand 3	A	1563	1571	anti-parallel
Strand 4	A	1601	1608	anti-parallel
Strand 5	A	1611	1617	anti-parallel
Strand 6	A	1632	1635	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1563	1571	first strand
Strand 2	A	1624	1627	anti-parallel

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There are 12 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1719	1722	first strand
Strand 2	A	1694	1699	parallel
Strand 3	A	1670	1675	parallel
Strand 4	A	1742	1747	parallel
Strand 5	A	1764	1769	parallel
Strand 6	A	1789	1793	parallel
Strand 7	B	1789	1793	anti-parallel
Strand 8	B	1764	1769	parallel
Strand 9	B	1742	1747	parallel
Strand 10	B	1670	1675	parallel
Strand 11	B	1694	1699	parallel
Strand 12	B	1719	1722	parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1778	1782	first strand
Strand 2	B	1778	1782	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2104	2111	first strand
Strand 2	A	2083	2084	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	50	53	anti-parallel
Strand 3	B	224	235	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	428	first strand
Strand 2	B	467	473	anti-parallel
Strand 3	B	479	484	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	576	579	parallel
Strand 3	B	491	496	parallel
Strand 4	B	756	761	parallel
Strand 5	B	779	783	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	675	first strand
Strand 2	B	619	624	anti-parallel
Strand 3	B	648	654	anti-parallel
Strand 4	B	639	645	anti-parallel
Strand 5	B	743	744	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	707	first strand
Strand 2	B	729	730	anti-parallel

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There are 12 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	949	anti-parallel
Strand 4	B	952	961	anti-parallel
Strand 5	B	911	920	anti-parallel
Strand 6	B	1049	1060	anti-parallel
Strand 7	B	1093	1103	anti-parallel
Strand 8	B	1087	1091	anti-parallel
Strand 9	B	1075	1083	anti-parallel
Strand 10	B	1018	1024	anti-parallel
Strand 11	B	1009	1014	anti-parallel
Strand 12	B	986	988	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	925	first strand
Strand 2	B	883	886	anti-parallel
Strand 3	B	877	881	anti-parallel
Strand 4	B	1000	1004	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1069	1071	first strand
Strand 2	B	1075	1083	anti-parallel

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There are 13 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1413	1418	first strand
Strand 2	B	1440	1445	parallel
Strand 3	B	1471	1476	parallel
Strand 4	B	1502	1507	parallel
Strand 5	B	1510	1518	anti-parallel
Strand 6	B	1115	1123	anti-parallel
Strand 7	B	2104	2111	anti-parallel
Strand 8	B	2055	2061	parallel
Strand 9	B	2014	2021	parallel
Strand 10	B	1965	1971	parallel
Strand 11	B	1886	1891	parallel
Strand 12	B	1910	1916	parallel
Strand 13	B	1937	1943	parallel

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There are 8 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1125	1129	first strand
Strand 2	B	1387	1395	parallel
Strand 3	B	1399	1406	anti-parallel
Strand 4	B	1342	1349	anti-parallel
Strand 5	B	1313	1319	parallel
Strand 6	B	1241	1247	parallel
Strand 7	B	1269	1276	parallel
Strand 8	B	1294	1298	parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1525	1529	first strand
Strand 2	B	1872	1876	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1531	1535	first strand
Strand 2	B	1544	1548	anti-parallel

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There are 6 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1827	1832	first strand
Strand 2	B	1850	1856	parallel
Strand 3	B	1563	1571	anti-parallel
Strand 4	B	1601	1608	anti-parallel
Strand 5	B	1611	1617	anti-parallel
Strand 6	B	1632	1635	anti-parallel

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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1563	1571	first strand
Strand 2	B	1624	1627	anti-parallel

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There are 2 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2104	2111	first strand
Strand 2	B	2083	2084	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZ9