Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VZA entry

There are 8 chains in PDB entry 2VZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11HIS 306
B
 THR 11HIS 306
C
 THR 11HIS 306
D
 THR 11HIS 306
E
 THR 11HIS 306
F
 THR 11HIS 306
G
 THR 11HIS 306
H
 THR 11HIS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 2VZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
35 55Right-handed alpha
Helix 3
3
A
64 76Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
134 137Right-handed 310
Helix 6
6
A
140 158Right-handed alpha
Helix 7
7
A
164 180Right-handed alpha
Helix 8
8
A
185 189Right-handed 310
Helix 9
9
A
190 205Right-handed alpha
Helix 10
10
A
207 219Right-handed alpha
Helix 11
11
A
219 233Right-handed alpha
Helix 12
12
A
280 282Right-handed 310
Helix 13
13
A
283 290Right-handed alpha
Helix 14
14
B
15 19Right-handed 310
Helix 15
15
B
35 57Right-handed alpha
Helix 16
16
B
64 76Right-handed alpha
Helix 17
17
B
116 133Right-handed alpha
Helix 18
18
B
134 137Right-handed 310
Helix 19
19
B
140 158Right-handed alpha
Helix 20
20
B
164 180Right-handed alpha
Helix 21
21
B
185 189Right-handed 310
Helix 22
22
B
190 204Right-handed alpha
Helix 23
23
B
207 219Right-handed alpha
Helix 24
24
B
219 232Right-handed alpha
Helix 25
25
B
280 282Right-handed 310
Helix 26
26
B
283 290Right-handed alpha
Helix 27
27
C
15 19Right-handed 310
Helix 28
28
C
35 57Right-handed alpha
Helix 29
29
C
64 77Right-handed alpha
Helix 30
30
C
116 133Right-handed alpha
Helix 31
31
C
134 137Right-handed 310
Helix 32
32
C
140 158Right-handed alpha
Helix 33
33
C
164 180Right-handed alpha
Helix 34
34
C
185 189Right-handed 310
Helix 35
35
C
190 205Right-handed alpha
Helix 36
36
C
207 219Right-handed alpha
Helix 37
37
C
219 232Right-handed alpha
Helix 38
38
C
280 282Right-handed 310
Helix 39
39
C
283 290Right-handed alpha
Helix 40
40
D
15 19Right-handed 310
Helix 41
41
D
35 57Right-handed alpha
Helix 42
42
D
64 77Right-handed alpha
Helix 43
43
D
116 133Right-handed alpha
Helix 44
44
D
134 137Right-handed 310
Helix 45
45
D
140 158Right-handed alpha
Helix 46
46
D
164 180Right-handed alpha
Helix 47
47
D
185 189Right-handed 310
Helix 48
48
D
190 204Right-handed alpha
Helix 49
49
D
207 219Right-handed alpha
Helix 50
50
D
219 233Right-handed alpha
Helix 51
51
D
280 282Right-handed 310
Helix 52
52
D
283 290Right-handed alpha
Helix 53
53
E
15 19Right-handed 310
Helix 54
54
E
35 55Right-handed alpha
Helix 55
55
E
64 77Right-handed alpha
Helix 56
56
E
116 133Right-handed alpha
Helix 57
57
E
134 137Right-handed 310
Helix 58
58
E
140 158Right-handed alpha
Helix 59
59
E
164 180Right-handed alpha
Helix 60
60
E
185 189Right-handed 310
Helix 61
61
E
190 204Right-handed alpha
Helix 62
62
E
207 219Right-handed alpha
Helix 63
63
E
219 232Right-handed alpha
Helix 64
64
E
280 282Right-handed 310
Helix 65
65
E
283 290Right-handed alpha
Helix 66
66
F
15 19Right-handed 310
Helix 67
67
F
35 55Right-handed alpha
Helix 68
68
F
64 77Right-handed alpha
Helix 69
69
F
116 133Right-handed alpha
Helix 70
70
F
134 137Right-handed 310
Helix 71
71
F
140 158Right-handed alpha
Helix 72
72
F
164 180Right-handed alpha
Helix 73
73
F
185 189Right-handed 310
Helix 74
74
F
190 205Right-handed alpha
Helix 75
75
F
207 219Right-handed alpha
Helix 76
76
F
219 235Right-handed alpha
Helix 77
77
F
280 282Right-handed 310
Helix 78
78
F
283 290Right-handed alpha
Helix 79
79
G
15 19Right-handed 310
Helix 80
80
G
35 57Right-handed alpha
Helix 81
81
G
64 77Right-handed alpha
Helix 82
82
G
116 133Right-handed alpha
Helix 83
83
G
134 137Right-handed 310
Helix 84
84
G
140 158Right-handed alpha
Helix 85
85
G
164 180Right-handed alpha
Helix 86
86
G
185 189Right-handed 310
Helix 87
87
G
190 205Right-handed alpha
Helix 88
88
G
207 219Right-handed alpha
Helix 89
89
G
219 234Right-handed alpha
Helix 90
90
G
280 282Right-handed 310
Helix 91
91
G
283 290Right-handed alpha
Helix 92
92
H
15 19Right-handed 310
Helix 93
93
H
35 55Right-handed alpha
Helix 94
94
H
64 76Right-handed alpha
Helix 95
95
H
116 133Right-handed alpha
Helix 96
96
H
134 137Right-handed 310
Helix 97
97
H
140 158Right-handed alpha
Helix 98
98
H
164 180Right-handed alpha
Helix 99
99
H
185 189Right-handed 310
Helix 100
100
H
190 205Right-handed alpha
Helix 101
101
H
207 219Right-handed alpha
Helix 102
102
H
219 236Right-handed alpha
Helix 103
103
H
280 282Right-handed 310
Helix 104
104
H
283 290Right-handed alpha
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There are 16 sheets in PDB entry 2VZA. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
98 99anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
273 278parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
253 261anti-parallel
Strand 5
A
296 299anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
98 99anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
273 278parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
253 261anti-parallel
Strand 5
B
296 299anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
98 99anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 247first strand
Strand 2
C
273 278parallel
Strand 3
C
265 270anti-parallel
Strand 4
C
253 261anti-parallel
Strand 5
C
296 299anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 92first strand
Strand 2
D
98 99anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
245 247first strand
Strand 2
D
273 278parallel
Strand 3
D
265 270anti-parallel
Strand 4
D
253 261anti-parallel
Strand 5
D
296 299anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
91 92first strand
Strand 2
E
98 99anti-parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
245 247first strand
Strand 2
E
273 278parallel
Strand 3
E
265 270anti-parallel
Strand 4
E
253 261anti-parallel
Strand 5
E
296 299anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
91 92first strand
Strand 2
F
98 99anti-parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
245 247first strand
Strand 2
F
273 278parallel
Strand 3
F
265 270anti-parallel
Strand 4
F
253 261anti-parallel
Strand 5
F
296 299anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
91 92first strand
Strand 2
G
98 99anti-parallel
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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
245 247first strand
Strand 2
G
273 278parallel
Strand 3
G
265 270anti-parallel
Strand 4
G
253 261anti-parallel
Strand 5
G
296 299anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
91 92first strand
Strand 2
H
98 99anti-parallel
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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
245 247first strand
Strand 2
H
273 278parallel
Strand 3
H
265 270anti-parallel
Strand 4
H
253 261anti-parallel
Strand 5
H
296 299anti-parallel
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