Analysis of interatomic Contacts of Structural Units in PDB entry:
2W16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W16 entry

There are 5 chains in PDB entry 2W16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 44PHE 815
B
 GLN 44PHE 815
C
 ARG 4ARG 4
C
 LYS 7LYS 7
C
 THR 9THR 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2W16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 66Right-handed alpha
Helix 2
2
A
73 78Right-handed alpha
Helix 3
3
A
90 100Right-handed alpha
Helix 4
4
A
161 165Right-handed 310
Helix 5
5
A
173 181Right-handed alpha
Helix 6
6
A
184 191Right-handed alpha
Helix 7
7
A
253 258Right-handed alpha
Helix 8
8
A
625 627Right-handed 310
Helix 9
9
A
647 652Right-handed alpha
Helix 10
10
A
722 726Right-handed 310
Helix 11
11
B
54 67Right-handed alpha
Helix 12
12
B
73 78Right-handed alpha
Helix 13
13
B
90 99Right-handed alpha
Helix 14
14
B
173 180Right-handed alpha
Helix 15
15
B
184 191Right-handed alpha
Helix 16
16
B
228 232Right-handed 310
Helix 17
17
B
253 258Right-handed alpha
Helix 18
18
B
647 653Right-handed alpha
Helix 19
19
B
722 726Right-handed 310
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There are 14 sheets in PDB entry 2W16. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
85 89anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
69 72parallel
Strand 4
A
132 133anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
243 251anti-parallel
Strand 3
A
263 270anti-parallel
Strand 4
A
217 219parallel
Strand 5
A
222 223anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
204 209anti-parallel
Strand 3
A
212 213anti-parallel
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There are 65 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 286first strand
Strand 2
A
290 300anti-parallel
Strand 3
A
307 318anti-parallel
Strand 4
A
326 341anti-parallel
Strand 5
A
344 358anti-parallel
Strand 6
A
392 406anti-parallel
Strand 7
A
410 430anti-parallel
Strand 8
A
441 466anti-parallel
Strand 9
A
471 490anti-parallel
Strand 10
A
520 538anti-parallel
Strand 11
A
543 558anti-parallel
Strand 12
A
563 578anti-parallel
Strand 13
A
583 594anti-parallel
Strand 14
A
611 624anti-parallel
Strand 15
A
629 645anti-parallel
Strand 16
A
664 682anti-parallel
Strand 17
A
685 698anti-parallel
Strand 18
A
711 720anti-parallel
Strand 19
A
728 737anti-parallel
Strand 20
A
760 772anti-parallel
Strand 21
A
775 782anti-parallel
Strand 22
A
290 300first strand
Strand 23
A
278 286anti-parallel
Strand 24
A
307 318first strand
Strand 25
A
290 300anti-parallel
Strand 26
A
326 341first strand
Strand 27
A
307 318anti-parallel
Strand 28
A
344 358first strand
Strand 29
A
326 341anti-parallel
Strand 30
A
392 406first strand
Strand 31
A
344 358anti-parallel
Strand 32
A
410 430first strand
Strand 33
A
392 406anti-parallel
Strand 34
A
441 466first strand
Strand 35
A
410 430anti-parallel
Strand 36
A
471 490first strand
Strand 37
A
441 466anti-parallel
Strand 38
A
499 500anti-parallel
Strand 39
A
441 466parallel
Strand 40
A
520 538first strand
Strand 41
A
471 490anti-parallel
Strand 42
A
543 558first strand
Strand 43
A
520 538anti-parallel
Strand 44
A
563 578first strand
Strand 45
A
543 558anti-parallel
Strand 46
A
583 594first strand
Strand 47
A
563 578anti-parallel
Strand 48
A
611 624first strand
Strand 49
A
583 594anti-parallel
Strand 50
A
629 645first strand
Strand 51
A
611 624anti-parallel
Strand 52
A
664 682first strand
Strand 53
A
629 645anti-parallel
Strand 54
A
685 698first strand
Strand 55
A
664 682anti-parallel
Strand 56
A
711 720first strand
Strand 57
A
685 698anti-parallel
Strand 58
A
728 737first strand
Strand 59
A
711 720anti-parallel
Strand 60
A
760 772first strand
Strand 61
A
728 737anti-parallel
Strand 62
A
775 782first strand
Strand 63
A
760 772anti-parallel
Strand 64
A
806 814first strand
Strand 65
A
278 286anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
798 801anti-parallel
Strand 3
A
790 793anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 746first strand
Strand 2
A
751 757anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
85 89anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
112 116parallel
Strand 3
B
105 107anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
243 251anti-parallel
Strand 3
B
263 270anti-parallel
Strand 4
B
217 219parallel
Strand 5
B
222 223anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 201first strand
Strand 2
B
204 209anti-parallel
Strand 3
B
212 213anti-parallel
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There are 46 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 286first strand
Strand 2
B
290 300anti-parallel
Strand 3
B
290 300first strand
Strand 4
B
278 286anti-parallel
Strand 5
B
307 318first strand
Strand 6
B
290 300anti-parallel
Strand 7
B
326 341first strand
Strand 8
B
307 318anti-parallel
Strand 9
B
344 358first strand
Strand 10
B
326 341anti-parallel
Strand 11
B
392 405first strand
Strand 12
B
344 358anti-parallel
Strand 13
B
411 430first strand
Strand 14
B
392 405anti-parallel
Strand 15
B
441 466first strand
Strand 16
B
411 430anti-parallel
Strand 17
B
471 490first strand
Strand 18
B
441 466anti-parallel
Strand 19
B
499 500anti-parallel
Strand 20
B
441 466anti-parallel
Strand 21
B
520 538first strand
Strand 22
B
471 490anti-parallel
Strand 23
B
543 557first strand
Strand 24
B
520 538anti-parallel
Strand 25
B
563 578first strand
Strand 26
B
543 557anti-parallel
Strand 27
B
583 594first strand
Strand 28
B
563 578anti-parallel
Strand 29
B
611 624first strand
Strand 30
B
583 594anti-parallel
Strand 31
B
629 645first strand
Strand 32
B
611 624anti-parallel
Strand 33
B
664 682first strand
Strand 34
B
629 645anti-parallel
Strand 35
B
685 698first strand
Strand 36
B
664 682anti-parallel
Strand 37
B
711 720first strand
Strand 38
B
685 698anti-parallel
Strand 39
B
728 737first strand
Strand 40
B
711 720anti-parallel
Strand 41
B
760 769first strand
Strand 42
B
728 737anti-parallel
Strand 43
B
775 782first strand
Strand 44
B
760 769anti-parallel
Strand 45
B
806 814first strand
Strand 46
B
278 286anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
798 801anti-parallel
Strand 3
B
790 793anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
740 746first strand
Strand 2
B
751 757anti-parallel
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