Analysis of interatomic Contacts of Structural Units in PDB entry:
2W3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W3M entry

There are 2 chains in PDB entry 2W3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 1ASP 186
B
VAL 1ASP 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2W3M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
27 40Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
102 107Right-handed alpha
Helix 6
6
A
117 127Right-handed alpha
Helix 7
7
B
27 40Right-handed alpha
Helix 8
8
B
54 60Right-handed alpha
Helix 9
9
B
61 65Right-handed 310
Helix 10
10
B
92 100Right-handed alpha
Helix 11
11
B
117 126Right-handed alpha
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There are 6 sheets in PDB entry 2W3M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 90first strand
Strand 2
A
70 75parallel
Strand 3
A
47 53parallel
Strand 4
A
109 114parallel
Strand 5
A
3 10parallel
Strand 6
A
130 138parallel
Strand 7
A
175 184anti-parallel
Strand 8
A
157 158anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 90first strand
Strand 2
A
70 75parallel
Strand 3
A
47 53parallel
Strand 4
A
109 114parallel
Strand 5
A
3 10parallel
Strand 6
A
130 138parallel
Strand 7
A
175 184anti-parallel
Strand 8
A
170 172anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 17first strand
Strand 2
A
146 147anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 90first strand
Strand 2
B
71 75parallel
Strand 3
B
47 53parallel
Strand 4
B
109 114parallel
Strand 5
B
3 10parallel
Strand 6
B
130 138parallel
Strand 7
B
175 184anti-parallel
Strand 8
B
157 158anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 90first strand
Strand 2
B
71 75parallel
Strand 3
B
47 53parallel
Strand 4
B
109 114parallel
Strand 5
B
3 10parallel
Strand 6
B
130 138parallel
Strand 7
B
175 184anti-parallel
Strand 8
B
170 172anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 17first strand
Strand 2
B
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il