Analysis of interatomic Contacts of Structural Units in PDB entry:
2W5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W5X entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 2W5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30ASP 83
A
 ALA 85GLN 375
B
 GLN 30ASP 83
B
 ALA 85GLN 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2W5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 57Right-handed alpha
Helix 2
2
A
61 66Right-handed 310
Helix 3
3
A
83 94Right-handed alpha
Helix 4
4
A
113 121Right-handed alpha
Helix 5
5
A
135 140Right-handed alpha
Helix 6
6
A
150 158Right-handed alpha
Helix 7
7
A
159 161Right-handed 310
Helix 8
8
A
171 176Right-handed alpha
Helix 9
9
A
182 190Right-handed alpha
Helix 10
10
A
201 205Right-handed 310
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
229 243Right-handed alpha
Helix 13
13
A
244 247Right-handed 310
Helix 14
14
A
257 264Right-handed alpha
Helix 15
15
A
266 292Right-handed alpha
Helix 16
16
A
350 355Right-handed 310
Helix 17
17
A
361 372Right-handed alpha
Helix 18
18
B
46 57Right-handed alpha
Helix 19
19
B
61 66Right-handed 310
Helix 20
20
B
83 94Right-handed alpha
Helix 21
21
B
113 121Right-handed alpha
Helix 22
22
B
135 140Right-handed alpha
Helix 23
23
B
150 159Right-handed alpha
Helix 24
24
B
171 176Right-handed alpha
Helix 25
25
B
182 190Right-handed alpha
Helix 26
26
B
201 206Right-handed alpha
Helix 27
27
B
222 226Right-handed 310
Helix 28
28
B
229 243Right-handed alpha
Helix 29
29
B
244 247Right-handed 310
Helix 30
30
B
257 264Right-handed alpha
Helix 31
31
B
266 292Right-handed alpha
Helix 32
32
B
350 355Right-handed 310
Helix 33
33
B
361 372Right-handed alpha
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There are 6 sheets in PDB entry 2W5X. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
210 214parallel
Strand 3
A
165 169parallel
Strand 4
A
124 132parallel
Strand 5
A
249 255parallel
Strand 6
A
36 42parallel
Strand 7
A
294 299parallel
Strand 8
A
342 347anti-parallel
Strand 9
A
68 73anti-parallel
Strand 10
A
356 359parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
337 338anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 316first strand
Strand 2
A
320 328anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
210 214parallel
Strand 3
B
165 169parallel
Strand 4
B
124 132parallel
Strand 5
B
249 255parallel
Strand 6
B
36 42parallel
Strand 7
B
294 299parallel
Strand 8
B
342 347anti-parallel
Strand 9
B
68 73anti-parallel
Strand 10
B
356 359parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
337 338anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
322 328anti-parallel
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