Analysis of interatomic Contacts of Structural Units in PDB entry:
2W6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W6D entry

There are 2 chains in PDB entry 2W6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2HIS 695
B
 VAL 2HIS 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 2W6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 44Right-handed alpha
Helix 2
2
A
51 67Right-handed alpha
Helix 3
3
A
81 90Right-handed alpha
Helix 4
4
A
131 139Right-handed alpha
Helix 5
5
A
147 151Right-handed 310
Helix 6
6
A
169 174Right-handed alpha
Helix 7
7
A
185 195Right-handed alpha
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
215 226Right-handed alpha
Helix 10
10
A
239 247Right-handed 310
Helix 11
11
A
252 272Right-handed alpha
Helix 12
12
A
283 285Right-handed 310
Helix 13
13
A
291 302Right-handed alpha
Helix 14
14
A
311 326Right-handed alpha
Helix 15
15
A
326 359Right-handed alpha
Helix 16
16
A
361 422Right-handed alpha
Helix 17
17
A
427 433Right-handed alpha
Helix 18
18
A
440 448Right-handed alpha
Helix 19
19
A
448 498Right-handed alpha
Helix 20
20
A
515 522Right-handed alpha
Helix 21
21
A
544 581Right-handed alpha
Helix 22
22
A
589 613Right-handed alpha
Helix 23
23
A
614 654Right-handed alpha
Helix 24
24
A
659 694Right-handed alpha
Helix 25
25
B
5 44Right-handed alpha
Helix 26
26
B
51 67Right-handed alpha
Helix 27
27
B
81 90Right-handed alpha
Helix 28
28
B
131 139Right-handed alpha
Helix 29
29
B
147 151Right-handed 310
Helix 30
30
B
169 174Right-handed alpha
Helix 31
31
B
185 195Right-handed alpha
Helix 32
32
B
196 200Right-handed 310
Helix 33
33
B
215 226Right-handed alpha
Helix 34
34
B
239 247Right-handed 310
Helix 35
35
B
252 272Right-handed alpha
Helix 36
36
B
283 285Right-handed 310
Helix 37
37
B
291 302Right-handed alpha
Helix 38
38
B
311 326Right-handed alpha
Helix 39
39
B
326 359Right-handed alpha
Helix 40
40
B
361 422Right-handed alpha
Helix 41
41
B
427 433Right-handed alpha
Helix 42
42
B
440 448Right-handed alpha
Helix 43
43
B
448 498Right-handed alpha
Helix 44
44
B
515 522Right-handed alpha
Helix 45
45
B
544 581Right-handed alpha
Helix 46
46
B
589 613Right-handed alpha
Helix 47
47
B
614 654Right-handed alpha
Helix 48
48
B
659 694Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2W6D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
107 111parallel
Strand 4
A
176 180anti-parallel
Strand 5
A
70 76parallel
Strand 6
A
203 209parallel
Strand 7
A
233 238parallel
Strand 8
A
287 289parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 531first strand
Strand 2
A
542 543parallel
Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
160 167anti-parallel
Strand 3
B
107 111parallel
Strand 4
B
176 180anti-parallel
Strand 5
B
70 76parallel
Strand 6
B
203 209parallel
Strand 7
B
233 238parallel
Strand 8
B
287 289parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
530 531first strand
Strand 2
B
542 543parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il