Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2W8I entry

There are 5 chains in PDB entry 2W8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 24	ALA 345
B	ILE 24	ALA 345
C	ILE 24	ALA 345
D	ILE 24	ALA 345
E	ILE 24	VAL 37

There are100 helices in PDB entry 2W8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	48	Right-handed 310
Helix 2	2	A	56	64	Right-handed alpha
Helix 3	3	A	73	82	Right-handed alpha
Helix 4	4	A	100	105	Right-handed alpha
Helix 5	5	A	112	116	Right-handed 310
Helix 6	6	A	140	153	Right-handed alpha
Helix 7	7	A	193	201	Right-handed alpha
Helix 8	8	A	209	212	Right-handed 310
Helix 9	9	A	225	231	Right-handed alpha
Helix 10	10	A	252	254	Right-handed 310
Helix 11	11	A	277	285	Right-handed alpha
Helix 12	12	A	324	331	Right-handed 310
Helix 13	13	B	45	48	Right-handed 310
Helix 14	14	B	56	64	Right-handed alpha
Helix 15	15	B	73	82	Right-handed alpha
Helix 16	16	B	100	105	Right-handed alpha
Helix 17	17	B	112	116	Right-handed 310
Helix 18	18	B	140	153	Right-handed alpha
Helix 19	19	B	193	201	Right-handed alpha
Helix 20	20	B	209	212	Right-handed 310
Helix 21	21	B	225	231	Right-handed alpha
Helix 22	22	B	235	238	Right-handed 310
Helix 23	23	B	252	254	Right-handed 310
Helix 24	24	B	277	285	Right-handed alpha
Helix 25	25	B	325	330	Right-handed alpha
Helix 26	26	C	45	48	Right-handed 310
Helix 27	27	C	56	64	Right-handed alpha
Helix 28	28	C	73	82	Right-handed alpha
Helix 29	29	C	100	105	Right-handed alpha
Helix 30	30	C	112	116	Right-handed 310
Helix 31	31	C	140	153	Right-handed alpha
Helix 32	32	C	193	201	Right-handed alpha
Helix 33	33	C	225	231	Right-handed alpha
Helix 34	34	C	235	238	Right-handed 310
Helix 35	35	C	252	254	Right-handed 310
Helix 36	36	C	277	285	Right-handed alpha
Helix 37	37	C	324	328	Right-handed 310
Helix 38	38	D	45	48	Right-handed 310
Helix 39	39	D	56	64	Right-handed alpha
Helix 40	40	D	73	82	Right-handed alpha
Helix 41	41	D	100	105	Right-handed alpha
Helix 42	42	D	112	116	Right-handed 310
Helix 43	43	D	140	153	Right-handed alpha
Helix 44	44	D	193	201	Right-handed alpha
Helix 45	45	D	225	231	Right-handed alpha
Helix 46	46	D	235	238	Right-handed 310
Helix 47	47	D	252	254	Right-handed 310
Helix 48	48	D	277	285	Right-handed alpha
Helix 49	49	D	324	331	Right-handed 310
Helix 50	50	E	45	48	Right-handed 310
Helix 51	51	E	56	64	Right-handed alpha
Helix 52	52	E	73	82	Right-handed alpha
Helix 53	53	E	100	105	Right-handed alpha
Helix 54	54	E	112	116	Right-handed 310
Helix 55	55	E	140	153	Right-handed alpha
Helix 56	56	E	193	201	Right-handed alpha
Helix 57	57	E	209	212	Right-handed 310
Helix 58	58	E	225	231	Right-handed alpha
Helix 59	59	E	235	238	Right-handed 310
Helix 60	60	E	252	254	Right-handed 310
Helix 61	61	E	277	285	Right-handed alpha
Helix 62	62	E	324	328	Right-handed 310
Helix 63	63	F	45	48	Right-handed 310
Helix 64	64	F	56	64	Right-handed alpha
Helix 65	65	F	73	82	Right-handed alpha
Helix 66	66	F	100	105	Right-handed alpha
Helix 67	67	F	112	116	Right-handed 310
Helix 68	68	F	140	153	Right-handed alpha
Helix 69	69	F	193	201	Right-handed alpha
Helix 70	70	F	225	231	Right-handed alpha
Helix 71	71	F	235	238	Right-handed 310
Helix 72	72	F	252	254	Right-handed 310
Helix 73	73	F	277	285	Right-handed alpha
Helix 74	74	F	324	331	Right-handed 310
Helix 75	75	G	45	48	Right-handed 310
Helix 76	76	G	56	64	Right-handed alpha
Helix 77	77	G	73	82	Right-handed alpha
Helix 78	78	G	100	105	Right-handed alpha
Helix 79	79	G	112	116	Right-handed 310
Helix 80	80	G	140	153	Right-handed alpha
Helix 81	81	G	193	201	Right-handed alpha
Helix 82	82	G	209	212	Right-handed 310
Helix 83	83	G	225	231	Right-handed alpha
Helix 84	84	G	235	238	Right-handed 310
Helix 85	85	G	252	254	Right-handed 310
Helix 86	86	G	277	285	Right-handed alpha
Helix 87	87	G	324	331	Right-handed 310
Helix 88	88	H	45	48	Right-handed 310
Helix 89	89	H	56	64	Right-handed alpha
Helix 90	90	H	73	82	Right-handed alpha
Helix 91	91	H	100	105	Right-handed alpha
Helix 92	92	H	112	116	Right-handed 310
Helix 93	93	H	140	153	Right-handed alpha
Helix 94	94	H	193	201	Right-handed alpha
Helix 95	95	H	209	212	Right-handed 310
Helix 96	96	H	225	231	Right-handed alpha
Helix 97	97	H	235	238	Right-handed 310
Helix 98	98	H	252	254	Right-handed 310
Helix 99	99	H	277	285	Right-handed alpha
Helix 100	100	H	324	328	Right-handed 310

There are 32 sheets in PDB entry 2W8I. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, GD, HA, HB, HC, HD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	313	318	parallel
Strand 3	A	293	303	anti-parallel
Strand 4	A	338	344	anti-parallel
Strand 5	A	256	261	parallel
Strand 6	A	267	270	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	161	167	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	132	135	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	172	177	anti-parallel
Strand 3	A	246	249	parallel
Strand 4	A	213	216	anti-parallel
Strand 5	A	223	224	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	313	318	parallel
Strand 3	B	293	303	anti-parallel
Strand 4	B	338	344	anti-parallel
Strand 5	B	256	261	parallel
Strand 6	B	267	270	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	161	167	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	132	135	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	246	249	parallel
Strand 4	B	213	216	anti-parallel
Strand 5	B	223	224	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	313	318	parallel
Strand 3	C	293	303	anti-parallel
Strand 4	C	338	344	anti-parallel
Strand 5	C	256	261	parallel
Strand 6	C	267	270	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	161	167	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	132	135	anti-parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	246	249	parallel
Strand 4	C	213	216	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	313	318	parallel
Strand 3	D	293	303	anti-parallel
Strand 4	D	338	344	anti-parallel
Strand 5	D	256	261	parallel
Strand 6	D	267	270	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	92	97	anti-parallel
Strand 3	D	161	167	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	132	135	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	172	177	anti-parallel
Strand 3	D	246	249	parallel
Strand 4	D	213	216	anti-parallel
Strand 5	D	223	224	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	54	first strand
Strand 2	E	313	318	parallel
Strand 3	E	293	303	anti-parallel
Strand 4	E	338	344	anti-parallel
Strand 5	E	256	261	parallel
Strand 6	E	267	270	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	161	167	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	132	135	anti-parallel

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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	186	first strand
Strand 2	E	172	177	anti-parallel
Strand 3	E	246	249	parallel
Strand 4	E	213	216	anti-parallel
Strand 5	E	223	224	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	54	first strand
Strand 2	F	313	318	parallel
Strand 3	F	293	303	anti-parallel
Strand 4	F	338	344	anti-parallel
Strand 5	F	256	261	parallel
Strand 6	F	267	270	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	92	97	anti-parallel
Strand 3	F	161	167	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	128	first strand
Strand 2	F	132	135	anti-parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	186	first strand
Strand 2	F	172	177	anti-parallel
Strand 3	F	246	249	parallel
Strand 4	F	213	216	anti-parallel
Strand 5	F	223	224	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	54	first strand
Strand 2	G	313	318	parallel
Strand 3	G	293	303	anti-parallel
Strand 4	G	338	344	anti-parallel
Strand 5	G	256	261	parallel
Strand 6	G	267	270	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	92	97	anti-parallel
Strand 3	G	161	167	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	G	132	135	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	172	177	anti-parallel
Strand 3	G	246	249	parallel
Strand 4	G	213	216	anti-parallel
Strand 5	G	223	224	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	54	first strand
Strand 2	H	313	318	parallel
Strand 3	H	293	303	anti-parallel
Strand 4	H	338	344	anti-parallel
Strand 5	H	256	261	parallel
Strand 6	H	267	270	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	92	97	anti-parallel
Strand 3	H	161	167	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	128	first strand
Strand 2	H	132	135	anti-parallel

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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	186	first strand
Strand 2	H	172	177	anti-parallel
Strand 3	H	246	249	parallel
Strand 4	H	213	216	anti-parallel
Strand 5	H	223	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2W8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8I