Analysis of interatomic Contacts of Structural Units in PDB entry:
2WKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WKP entry

There is 1 chain in PDB entry 2WKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 404PRO 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WKP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
407 411Right-handed 310
Helix 2
2
A
431 439Right-handed alpha
Helix 3
3
A
441 446Right-handed alpha
Helix 4
4
A
449 454Right-handed 310
Helix 5
5
A
459 472Right-handed alpha
Helix 6
6
A
521 544Right-handed alpha
Helix 7
7
A
558 569Right-handed alpha
Helix 8
8
A
604 608Right-handed 310
Helix 9
9
A
610 615Right-handed 310
Helix 10
10
A
629 639Right-handed alpha
Helix 11
11
A
639 648Right-handed alpha
Helix 12
12
A
659 663Right-handed 310
Helix 13
13
A
665 675Right-handed alpha
Helix 14
14
A
681 693Right-handed alpha
Helix 15
15
A
707 721Right-handed alpha
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There are 2 sheets in PDB entry 2WKP. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
427 430first strand
Strand 2
A
415 418anti-parallel
Strand 3
A
506 516anti-parallel
Strand 4
A
489 500anti-parallel
Strand 5
A
476 483anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
580 589first strand
Strand 2
A
592 601anti-parallel
Strand 3
A
547 553parallel
Strand 4
A
620 626parallel
Strand 5
A
653 658parallel
Strand 6
A
696 699parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il