Analysis of interatomic Contacts of Structural Units in PDB entry:
2WMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WMH entry

There is 1 chain in PDB entry 2WMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 35ILE 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2WMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 73Right-handed alpha
Helix 2
2
A
78 80Right-handed 310
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
102 120Right-handed alpha
Helix 5
5
A
137 148Right-handed alpha
Helix 6
6
A
166 181Right-handed alpha
Helix 7
7
A
191 201Right-handed alpha
Helix 8
8
A
201 212Right-handed alpha
Helix 9
9
A
226 240Right-handed alpha
Helix 10
10
A
252 258Right-handed alpha
Helix 11
11
A
271 277Right-handed 310
Helix 12
12
A
279 292Right-handed alpha
Helix 13
13
A
302 307Right-handed alpha
Helix 14
14
A
314 320Right-handed alpha
Helix 15
15
A
320 331Right-handed alpha
Helix 16
16
A
335 343Right-handed alpha
Helix 17
17
A
350 352Right-handed 310
Helix 18
18
A
353 357Right-handed 310
Helix 19
19
A
390 398Right-handed alpha
Helix 20
20
A
408 412Right-handed 310
Helix 21
21
A
413 422Right-handed alpha
Helix 22
22
A
496 501Right-handed alpha
Helix 23
23
A
507 511Right-handed 310
Helix 24
24
A
513 526Right-handed alpha
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There are 5 sheets in PDB entry 2WMH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 53first strand
Strand 2
A
297 301parallel
Strand 3
A
245 251parallel
Strand 4
A
215 220parallel
Strand 5
A
184 188parallel
Strand 6
A
151 157parallel
Strand 7
A
123 129parallel
Strand 8
A
82 87parallel
Strand 9
A
47 53parallel
Strand 10
A
47 53first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
312 313anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
345 348parallel
Strand 3
A
402 404parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
452 457anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
537 544anti-parallel
Strand 5
A
574 581anti-parallel
Strand 6
A
562 569anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 435first strand
Strand 2
A
438 442anti-parallel
Strand 3
A
475 480anti-parallel
Strand 4
A
485 490anti-parallel
Strand 5
A
584 589anti-parallel
Strand 6
A
554 557anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il