Analysis of interatomic Contacts of Structural Units in PDB entry:
2WNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WNP entry

There is 1 chain in PDB entry 2WNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 SER 81ALA 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2WNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
F
88 95Right-handed alpha
Helix 2
2
F
142 148Right-handed alpha
Helix 3
3
F
161 170Right-handed alpha
Helix 4
4
F
198 202Right-handed 310
Helix 5
5
F
240 245Right-handed alpha
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There are 4 sheets in PDB entry 2WNP. Click on sheet of interest to get list of strands forming it: FA, FB, FC, FD,

There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
103 106first strand
Strand 2
F
112 117anti-parallel
Strand 3
F
127 132anti-parallel
Strand 4
F
289 296anti-parallel
Strand 5
F
173 180anti-parallel
Strand 6
F
186 191anti-parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
103 106first strand
Strand 2
F
112 117anti-parallel
Strand 3
F
127 132anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
195 196first strand
Strand 2
F
205 206anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
257 258first strand
Strand 2
F
276 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il