Analysis of interatomic Contacts of Structural Units in PDB entry:
2WOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WOT entry

There is 1 chain in PDB entry 2WOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 198GLY 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
201 203Right-handed 310
Helix 2
2
A
235 237Right-handed 310
Helix 3
3
A
238 250Right-handed alpha
Helix 4
4
A
287 295Right-handed alpha
Helix 5
5
A
302 311Right-handed alpha
Helix 6
6
A
313 318Right-handed alpha
Helix 7
7
A
335 337Right-handed 310
Helix 8
8
A
375 379Right-handed 310
Helix 9
9
A
380 385Right-handed alpha
Helix 10
10
A
392 404Right-handed alpha
Helix 11
11
A
406 414Right-handed alpha
Helix 12
12
A
437 446Right-handed alpha
Helix 13
13
A
455 459Right-handed 310
Helix 14
14
A
461 475Right-handed alpha
Helix 15
15
A
484 499Right-handed alpha
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There are 3 sheets in PDB entry 2WOT. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
230 234anti-parallel
Strand 4
A
274 280anti-parallel
Strand 5
A
264 269anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
356 359anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il