Analysis of interatomic Contacts of Structural Units in PDB entry:
2WPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WPA entry

There are 4 chains in PDB entry 2WPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3LEU 298
B
 VAL 175LEU 432
C
 ASP 0LEU 298
D
 HIS 179LEU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 2WPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 3Right-handed alpha
Helix 2
2
A
45 56Right-handed alpha
Helix 3
3
A
87 94Right-handed alpha
Helix 4
4
A
100 113Right-handed alpha
Helix 5
5
A
115 120Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
165 169Right-handed 310
Helix 8
8
A
170 175Right-handed alpha
Helix 9
9
A
182 189Right-handed alpha
Helix 10
10
A
191 199Right-handed alpha
Helix 11
11
A
207 219Right-handed alpha
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
260 267Right-handed alpha
Helix 14
14
A
276 281Right-handed alpha
Helix 15
15
A
282 287Right-handed 310
Helix 16
16
B
178 193Right-handed alpha
Helix 17
17
B
199 203Right-handed 310
Helix 18
18
B
207 221Right-handed alpha
Helix 19
19
B
228 244Right-handed alpha
Helix 20
20
B
258 269Right-handed alpha
Helix 21
21
B
274 281Right-handed alpha
Helix 22
22
B
287 303Right-handed alpha
Helix 23
23
B
310 320Right-handed alpha
Helix 24
24
B
326 336Right-handed alpha
Helix 25
25
B
338 342Right-handed 310
Helix 26
26
B
343 348Right-handed alpha
Helix 27
27
B
351 356Right-handed alpha
Helix 28
28
B
358 368Right-handed alpha
Helix 29
29
B
373 380Right-handed alpha
Helix 30
30
B
383 400Right-handed alpha
Helix 31
31
B
401 404Right-handed 310
Helix 32
32
B
407 413Right-handed alpha
Helix 33
33
B
414 419Right-handed 310
Helix 34
34
C
0 2Right-handed 310
Helix 35
35
C
45 58Right-handed alpha
Helix 36
36
C
87 94Right-handed alpha
Helix 37
37
C
100 113Right-handed alpha
Helix 38
38
C
115 121Right-handed alpha
Helix 39
39
C
129 131Right-handed 310
Helix 40
40
C
165 169Right-handed 310
Helix 41
41
C
170 175Right-handed alpha
Helix 42
42
C
182 189Right-handed alpha
Helix 43
43
C
191 199Right-handed alpha
Helix 44
44
C
207 219Right-handed alpha
Helix 45
45
C
247 252Right-handed alpha
Helix 46
46
C
260 267Right-handed alpha
Helix 47
47
C
276 281Right-handed alpha
Helix 48
48
C
283 287Right-handed 310
Helix 49
49
D
179 193Right-handed alpha
Helix 50
50
D
199 203Right-handed 310
Helix 51
51
D
207 221Right-handed alpha
Helix 52
52
D
228 246Right-handed alpha
Helix 53
53
D
258 269Right-handed alpha
Helix 54
54
D
274 282Right-handed alpha
Helix 55
55
D
287 302Right-handed alpha
Helix 56
56
D
310 320Right-handed alpha
Helix 57
57
D
326 336Right-handed alpha
Helix 58
58
D
338 342Right-handed 310
Helix 59
59
D
343 348Right-handed alpha
Helix 60
60
D
351 356Right-handed alpha
Helix 61
61
D
358 368Right-handed alpha
Helix 62
62
D
373 380Right-handed alpha
Helix 63
63
D
387 401Right-handed alpha
Helix 64
64
D
402 404Right-handed 310
Helix 65
65
D
407 413Right-handed alpha
Helix 66
66
D
414 419Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2WPA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
75 81anti-parallel
Strand 5
C
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
150 151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il