Analysis of interatomic Contacts of Structural Units in PDB entry:
2WPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WPT entry

There are 2 chains in PDB entry 2WPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 4GLN 85
B
PRO 8LYS 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2WPT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 24Right-handed alpha
Helix 3
3
A
29 45Right-handed alpha
Helix 4
4
A
50 55Right-handed alpha
Helix 5
5
A
67 78Right-handed alpha
Helix 6
6
B
21 26Right-handed alpha
Helix 7
7
B
35 43Right-handed alpha
Helix 8
8
B
49 64Right-handed alpha
Helix 9
9
B
64 69Right-handed alpha
Helix 10
10
B
72 81Right-handed alpha
Helix 11
11
B
88 92Right-handed 310
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There is 1 sheet ( BA) in PDB entry 2WPT.

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 103first strand
Strand 2
B
119 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il